Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 1974 a.a., Signal transduction histidine kinase CheA (EC 2.7.3.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  174 bits (441), Expect = 4e-47
 Identities = 99/346 (28%), Positives = 193/346 (55%), Gaps = 8/346 (2%)

Query: 410  RKLAQDIKA-EQSVIS--RLAEDLQSVVMQVRMVPLATVFQRYPRLIRDISRKLGKQVDL 466
            R L + ++A E S+++  R   +LQ  +++ RMV    + +R  R++R  S++ GKQV L
Sbjct: 1463 RNLQRAVEATEDSLVAQARQTRELQRDLLRTRMVEFEGISERLYRVVRQASKETGKQVRL 1522

Query: 467  IIEGEDTEADKSIVEDLSEPLVHLIRNALDHGIESPDIRREQGKNPTGKITLSAFTLDDS 526
             I G + E D+ +++ ++    HL+RN++ HGIE P+ R++ GK   G+I +      + 
Sbjct: 1523 DITGGNIEMDRGVLDRMTAAFEHLLRNSVAHGIEVPERRQQAGKPAEGQIEIVLGHELND 1582

Query: 527  VIIKMSDDGKGVDVERVKTKALERGLVEASKLERMSQQEIIHLIFEPGFSTVEQVSDLSG 586
            V +  +DDG G+D+ R++ K   +GL+      ++S +E   L+FEPG ST  +VS+L+G
Sbjct: 1583 VSLVFTDDGAGLDLVRLREKGQAQGLIPPG--TQLSDEEAAQLVFEPGISTAREVSELAG 1640

Query: 587  RGVGMDAVRTAIERNGGTLTLSSEPGKGSEITMILPLSMTISRVMMFELEQQSFAIPIES 646
            RG+GMD VR  +   GG +  +++ G+G+   ++LPL+  +++V+M      +  +P  +
Sbjct: 1641 RGIGMDVVRNDVVALGGRIETATQAGQGTSFKLVLPLTTAVTQVVMLRAGGLTVGVP-SN 1699

Query: 647  VIQTLKISRHKDIRRVKNLDTFILRGETVPILYLKRAFEMN--SAQIYPDIQPILVVRVG 704
            +++ ++   ++D+ +        + GE VP  +     + +  S +++   QP+++ R  
Sbjct: 1700 LVEVVRRLGNEDLAKAYASGHLNVAGEDVPFYWSGALLQSSPRSTEVHGRTQPVVIFRSA 1759

Query: 705  DDVLGLAVDRLQEGQDVIIKPLEGALATFSIYRGAAIMGDGRVLLV 750
               + L VD +   Q+V++K L   L+      G +++  G V L+
Sbjct: 1760 AQRVALHVDEVLGNQEVVVKNLGSQLSRLPGLAGMSVLASGAVALI 1805



 Score = 43.9 bits (102), Expect = 8e-08
 Identities = 38/175 (21%), Positives = 77/175 (44%), Gaps = 12/175 (6%)

Query: 4   IMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLA 63
           ++  F+ E+R+++ +    +  L+  P D   +  L R  HT+KG+S ++  +  F + A
Sbjct: 697 LLDIFLEEAREVVANGLEAVSHLQVQPSDLEHLTTLRRAFHTLKGSSRMV-GLDEFGEAA 755

Query: 64  HRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQEL---------SAEAVS 114
             ME L+  V       +  +L L      +F  W++++   + +         SAEA+ 
Sbjct: 756 WAMEQLLNTVLAEQRPASPPLLTLAGEAMTEFGRWVDDISARRAVPWRSLPFRASAEALR 815

Query: 115 ISKQMIAQLAPLTQAAPTHTPTPAVAAQEETATLSISELTELLGRDCFN-DVEAL 168
              Q +   +P  +A     P P  AA  E      + + + +    F+ D++A+
Sbjct: 816 DQGQYLPLASPDVEAT-VSAPVPLEAAVYEPPPTEEAPVADAVAAPSFDLDLDAV 869



 Score = 41.6 bits (96), Expect = 4e-07
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 14/136 (10%)

Query: 8    FIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLAHRME 67
            F  E+++LI      L    A PD+ +   E+ R +HT+KG S  L       ++AHRME
Sbjct: 1205 FAEEAQELIPQLDGALRQWVARPDNGSARAEVLRNLHTLKG-SARLAGALRLGEMAHRME 1263

Query: 68   DLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISKQMIAQLAPLT 127
               +++  G     G  L+ +    D      E+L      +A+A     Q+I  + P+ 
Sbjct: 1264 TAAERL--GSDLQRGADLEALQTAFDAISARFEQLR-----NADA-----QIIDIVPPVP 1311

Query: 128  QAAPTHTPTPAVAAQE 143
            ++ P   P PA AA E
Sbjct: 1312 ESVPAR-PVPAAAAPE 1326