Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 804 a.a., hypothetical protein from Methylophilus sp. DMC18

 Score =  260 bits (664), Expect = 2e-73
 Identities = 146/392 (37%), Positives = 233/392 (59%), Gaps = 16/392 (4%)

Query: 371 TLKVDQEKVDLLMDLVGELIVAKNSMQYLAYR---AENEFGVRKLAQDIKAEQSVISRLA 427
           +++V  EKVD L++LVGEL++ +  ++         +NE  +  ++Q        ++R  
Sbjct: 397 SIRVGIEKVDQLINLVGELVITQAMIEQRVNALDPVDNEALINSVSQ--------LTRNT 448

Query: 428 EDLQSVVMQVRMVPLATVFQRYPRLIRDISRKLGKQVDLIIEGEDTEADKSIVEDLSEPL 487
            DLQ  VM +RM+P+  VF R+PR++RD++ KLGK+VD +  G  TE DKS++E + +PL
Sbjct: 449 RDLQESVMSIRMMPMDFVFSRFPRMVRDLAGKLGKKVDFVTSGATTELDKSLIERIVDPL 508

Query: 488 VHLIRNALDHGIESPDIRREQGKNPTGKITLSAFTLDDSVIIKMSDDGKGVDVERVKTKA 547
            HL+RN++DHGIE P++R++ GK   G +TLSA     S++I+++DDG G++ +++  KA
Sbjct: 509 THLVRNSVDHGIEKPEVRKQLGKAENGTLTLSAAHKGGSIVIEVTDDGGGLNRDKILAKA 568

Query: 548 LERGLVEASKLERMSQQEIIHLIFEPGFSTVEQVSDLSGRGVGMDAVRTAIERNGGTLTL 607
           +  GL  +   E MS  ++  LIF PGFST E V+D+SGRGVGMD V+  I   GG + +
Sbjct: 569 MSNGLPVS---ESMSDADVYSLIFAPGFSTAEVVTDVSGRGVGMDVVKRNITAMGGNIEI 625

Query: 608 SSEPGKGSEITMILPLSMTISRVMMFELEQQSFAIPIESVIQTLKISRHKDIRRVKNLDT 667
            S  G G+ I++ LPL++ I   M   L++  + +P+  +++TL+  R +D++ V     
Sbjct: 626 RSALGYGTTISISLPLTLAILDGMSVSLDKSVYVVPLNLIVETLQ-PRAEDLKTVTGEGL 684

Query: 668 FI-LRGETVPILYLKRAFEMNSAQIYPDIQPILVVRVGDDVLGLAVDRLQEGQDVIIKPL 726
            + +RGE +PI+ L   F   +    P    +L++        L VDRL   Q V+IK L
Sbjct: 685 MVHVRGEYLPIIALHALFNHPTQITNPTDGVLLILEADGKKSALFVDRLVGQQQVVIKSL 744

Query: 727 EGALATFSIYRGAAIMGDGRVLLVLDTEEVVK 758
           E          GA IMGDG V L+LD   +++
Sbjct: 745 ETNFKRIPGVSGATIMGDGSVALILDVPAIIQ 776



 Score = 55.5 bits (132), Expect = 1e-11
 Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 8/159 (5%)

Query: 1   MNPIMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFT 60
           M+   + F  E+ +L+  A R LL ++    D   +N +FR  H++KG +          
Sbjct: 5   MSQFYEVFFDEAEELLAEAERLLLDIDVESPDIEQLNAIFRAAHSIKGGAATF-GFMDMA 63

Query: 61  QLAHRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISKQMI 120
           ++ H +E+L+ K+R   +AL    +D  L   D   + ++       + AE V     M+
Sbjct: 64  EITHVLENLLDKIRKQEMALTTEHVDAFLAAKDVIKMQLDGHRHGSAVDAEQVGDVSMML 123

Query: 121 AQLAPLTQAAP------THTPTPAV-AAQEETATLSISE 152
             L+    A P        TP P V     E   LS+SE
Sbjct: 124 KSLSEGKSAIPEDPVIAAATPEPEVLVVGAEKPALSVSE 162