Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 2224 a.a., Chemotaxis protein histidine kinase and related kinases from Kangiella aquimarina DSM 16071

 Score =  227 bits (578), Expect = 6e-63
 Identities = 126/387 (32%), Positives = 229/387 (59%), Gaps = 12/387 (3%)

Query: 374  VDQEKVDLLMDLVGELIVAKNSMQYLAYRAENEFGVRKLAQDIKAEQSVISRLAEDLQSV 433
            ++ ++     +L   L+ A + +  +    E + G      D +A      R+  +LQ  
Sbjct: 1701 LEMDRYTRQQELTRSLLEAASDLMSIQETLETKVG------DAEATLLAQGRVNTELQDR 1754

Query: 434  VMQVRMVPLATVFQRYPRLIRDISRKLGKQVDLIIEGEDTEADKSIVEDLSEPLVHLIRN 493
            +M+ RMVP  ++  R  R++R IS +L K VDLI+E E  E D++++E +  PL H++RN
Sbjct: 1755 LMRTRMVPFNSIESRLRRMVRQISTELNKDVDLILESEG-EMDRTVIERMVAPLDHMLRN 1813

Query: 494  ALDHGIESPDIRREQGKNPTGKITLSAFTLDDSVIIKMSDDGKGVDVERVKTKALERGLV 553
            A+DHGIES D R++ GK   G + LS     + V I++ DDG G+  ++V+ +A+ +G++
Sbjct: 1814 AIDHGIESKDERKKAGKAEKGTVHLSLSRRGNEVYIQIQDDGAGIRKDKVRKRAISQGMI 1873

Query: 554  EASKLERMSQQEIIHLIFEPGFSTVEQVSDLSGRGVGMDAVRTAIERNGGTLTLSSEPGK 613
            + S     + +E+  LI +PGFST E V+ +SGRGVGMD V + I + GG+L +SSE GK
Sbjct: 1874 DESY--NPTDRELFRLILQPGFSTAETVTQISGRGVGMDVVHSEILQLGGSLNISSEEGK 1931

Query: 614  GSEITMILPLSMTISRVMMFELEQQSFAIPIESVIQTLKISRHKDIRRVKNLD-TFILRG 672
            G+ +T+ LP +++ ++ +M +++ + +AIP+ ++    ++S  + +   ++ D TF   G
Sbjct: 1932 GTTMTVRLPFTLSSNQALMVKVKGEPYAIPLSNITTVARVSAKEVLEIYQDKDKTFTHLG 1991

Query: 673  ETVPILYLKRAFEMNSAQIYP--DIQPILVVRVGDDVLGLAVDRLQEGQDVIIKPLEGAL 730
            E   + YL +  + NS  + P  +  P+L+++  D  + + VD L   +++++K +   +
Sbjct: 1992 EEYELRYLGQILDRNSDIVPPVDEFVPVLIIQGEDKPIAVHVDELIGSREIVVKNIGRQI 2051

Query: 731  ATFSIYRGAAIMGDGRVLLVLDTEEVV 757
            +T     GA+I+GDG V+L+LD + +V
Sbjct: 2052 STVPGISGASILGDGSVVLILDMQTLV 2078



 Score = 48.1 bits (113), Expect = 5e-09
 Identities = 93/460 (20%), Positives = 173/460 (37%), Gaps = 80/460 (17%)

Query: 4    IMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLA 63
            +++ F  E+ +L +S A  L      P++  II EL R +HT+KG S  +   +P   LA
Sbjct: 1273 LLEIFSEEAEELFDSDANLLQKWRQEPNNLKIIAELQRNLHTLKG-SARMAGFSPIGDLA 1331

Query: 64   HRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISK------ 117
            H +EDL   + D   A +   +DL     D+ L         +++ + A  + +      
Sbjct: 1332 HGLEDLYTAITDQLFASSEEAIDLAERAEDKLLAIFNARNTPEKIPSPAAMLDEIEGFIA 1391

Query: 118  -----------QMIAQLAPLTQAAPTHTPTPAVAAQEETATLSISELTELLGRDCFNDVE 166
                       Q  A +AP  +      P  A        T   +E  E+  ++  +  E
Sbjct: 1392 AQKAGRAYVRPQSEADIAPAAEEVKPSEPEKAEETTPVAETQQPAEPEEIESKEEIDTEE 1451

Query: 167  ALLEHPDALLLIYTPDKQCFFSGDDPLAWMRSVEKVSWRKVVLIPDSEPFDTYQAQMQFL 226
            A      A L +    +      +    W   +  V           EP +T  A     
Sbjct: 1452 AAWNEELAELFLGEASELLTSYEEAIERWSNDLHNV-----------EPLNT--AMRNLH 1498

Query: 227  LLTQSAKKDLEQQLAPIEGQYRLYRIQSDNLPTAPIDQRTQYVERIVKQQIALLREEQVS 286
             L   AK      LA I                 P+ + T  +E +V+   AL R+ ++ 
Sbjct: 1499 TLKSGAK------LAAI----------------TPVGELTHKLEGVVE---ALARDPRLG 1533

Query: 287  ESVRAGTFLSIKNLYCALSQQISD-RPAPLPESVSADELITLFDNILLSFAHRTAIIDKC 345
             +  A     ++  Y  L + +   R   +P   +  EL+   +N   +   +   +DK 
Sbjct: 1534 HARWAD---MLRRSYDELHEMVDQVRNGQMPAKPA--ELLRKLENDKATIESQLEQLDKR 1588

Query: 346  E-NEPAQPSAITVNEQLDKVKKKQIK--------TLKVDQEKVDLLMDLVGELIVAKNSM 396
            +  E  + + + +    D+ K+K+ +         ++V  E +D L++L GE  +     
Sbjct: 1589 DLAESGEQAEVKIVSLADRQKQKEEEAKEAANRDVIRVRSEVLDNLVNLSGEASI----- 1643

Query: 397  QYLAYRAENEFGVRKLAQDIKAEQSVISRLAEDLQSVVMQ 436
                +R+  E  V  L  ++    S + RL E L+++ ++
Sbjct: 1644 ----FRSRLEQQVADLNFNLGEMSSTVDRLREQLRNLEIE 1679



 Score = 28.9 bits (63), Expect = 0.003
 Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 12/148 (8%)

Query: 4   IMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLA 63
           + + FI E+ +++E     L   + +  +K  I+ + R  HT+KG SG +       +L+
Sbjct: 601 VREIFIEEADEVLEEMHSLLPEWKQDQTNKEAISTIRRNFHTLKG-SGRMVGATDIGELS 659

Query: 64  HRMEDLMQKVRDGHVALNGTML-------DLMLGCCDQFLLWIEELEQHQELSAEAVSIS 116
             +E+++ ++ D  +     +        + +     QF    E+ +  +EL+  A  IS
Sbjct: 660 WAIENMLNRLIDHSIEYTPALFVTTEEVANTLPEMVKQFASG-EKTKFPKELADRANRIS 718

Query: 117 K-QMIAQLAPLTQAAPTHTPTPAVAAQE 143
           K +MI  L P  Q   T   +   A QE
Sbjct: 719 KGEMITDLQP--QQEQTEEESDQAAEQE 744



 Score = 28.5 bits (62), Expect = 0.004
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 1/98 (1%)

Query: 35  IINELFREIHTVKGASGILDNIAPFTQLAHRMEDLMQKVRDGHVALNGTMLDLMLGCCDQ 94
           I + L R +HT+KG + I  NI   T +   +E   Q+++   +      + L+    D 
Sbjct: 776 ISDNLLRSLHTLKGVAHIA-NIQSLTNVIVPVESYFQELKTRELLAEEADMSLIDHTKDL 834

Query: 95  FLLWIEELEQHQELSAEAVSISKQMIAQLAPLTQAAPT 132
               I   E  Q +SA    I +Q+  Q     ++  T
Sbjct: 835 LRHIISTPEDDQVISAHEDEILQQLAQQQKRFDESGET 872