Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 989 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score =  214 bits (546), Expect = 1e-59
 Identities = 116/351 (33%), Positives = 198/351 (56%), Gaps = 5/351 (1%)

Query: 414 QDIKAEQSVISRLAEDLQSVVMQVRMVPLATVFQRYPRLIRDISRKLGKQVDLIIEGEDT 473
           +D+    + +SR  + L+   + +R+VP+ ++F ++PR++R+++R  GK V    EG + 
Sbjct: 628 RDLLDLDTQLSRSVDRLREAALDLRVVPIESLFNQFPRVVRELARGQGKSVRFATEGGEV 687

Query: 474 EADKSIVEDLSEPLVHLIRNALDHGIESPDIRREQGKNPTGKITLSAFTLDDSVIIKMSD 533
             DKS+VE L +PL+H++RNA+DHGIE    R   GK     ++L A   +  V++++ D
Sbjct: 688 RIDKSMVEMLYDPLMHMVRNAIDHGIEPAADREAAGKPAQATLSLRAIQRNSRVVVEIVD 747

Query: 534 DGKGVDVERVKTKALERGLVEASKLERMSQQEIIHLIFEPGFSTVEQVSDLSGRGVGMDA 593
           DG+G+  E V+ KA+ +GL+       +S   +   IF PGFST + V++ SGRGVGMD 
Sbjct: 748 DGRGIATEAVRAKAVRQGLIGEEDSLHLSPDAVREFIFAPGFSTADTVTETSGRGVGMDV 807

Query: 594 VRTAIERNGGTLTLSSEPGKGSEITMILPLSMTISRVMMFELEQQSFAIPIESVIQTLKI 653
           VRTAI R GG++ + +  G G+   + LPLS  I R ++ +++ Q  AIP   V +    
Sbjct: 808 VRTAITRLGGSIAIRTREGAGTAFAIDLPLSAAILRTLLVQVDDQVLAIPDRFVEEVCGF 867

Query: 654 SRHKDIRRVKNLDTFILRGETVPILYLKRAFEMNSAQIYPDIQP----ILVVRVGDDVLG 709
           +   D  RV    T + R   +P++ L  A    +   +P   P    ++V+R G   +G
Sbjct: 868 TA-DDFHRVSGCWTVMRRKRVLPVVRLADALGFPAEGEWPPSGPGQRLVVVLRQGSRRIG 926

Query: 710 LAVDRLQEGQDVIIKPLEGALATFSIYRGAAIMGDGRVLLVLDTEEVVKHA 760
           L +D+L    D+ ++     LA      G +++ DGR++++LD +E+ + A
Sbjct: 927 LEIDKLLRRGDLFVRESHPGLAEVPGVGGVSLLNDGRIVIILDGDELYRLA 977



 Score = 38.1 bits (87), Expect = 2e-06
 Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 11/153 (7%)

Query: 4   IMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLA 63
           + + F +E+ +  +   + L A   +  +   I  LFR  H++KGA+  +D  A    +A
Sbjct: 9   LWRQFGVEAGEHFDLLEKLLSAGPGDGPEAERIAALFRSFHSLKGAARAMDLFA-MEAVA 67

Query: 64  HRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISKQMIAQL 123
           HR E ++ +VR G +AL   +   +L   D  L  + E         +A +    ++A+L
Sbjct: 68  HRAETILGRVRSGTLALTEEVAAPLLEALDA-LRGLAEAGMRDRRDGQAPA---DLLARL 123

Query: 124 ------APLTQAAPTHTPTPAVAAQEETATLSI 150
                  P  + A    P P V   E    L +
Sbjct: 124 DALGGEGPAAKPAAAPPPPPLVRLHENERMLGL 156