Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 481 a.a., deoxyribodipyrimidine photolyase from Pseudomonas simiae WCS417

 Score =  114 bits (285), Expect = 8e-30
 Identities = 125/497 (25%), Positives = 229/497 (46%), Gaps = 48/497 (9%)

Query: 4   INLVWLKRDLRLTDHAPLQAALTSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAIN 63
           ++L+WL+ DLRL D+  L AA   G P   +YL  P        +     F  ++LQ ++
Sbjct: 1   MHLIWLRTDLRLHDNTALAAASQRG-PIAAVYLITPQQWQSHDDAPCKVDFWLRNLQDLS 59

Query: 64  RDLAQSKGEVLIVTS-DWQTC---FARIAERYAIEAIYSHQEVGLACTFQRDLALAQWCQ 119
           + L      +LI T+  W       +++    ++E+++ ++E G+  + +RD A+++  +
Sbjct: 60  KTLGALNIPLLIRTAATWDQAPDVLSKLCRELSVESVHVNEEYGIHES-RRDAAVSKALE 118

Query: 120 QHDIVWHEFPYAAVIRGAQTRKNWDEHWQ--QVMRSPC---CDPDLTRANWLKLDAATLG 174
              + +H +      +          ++Q     R  C       L R        A L 
Sbjct: 119 ADGVTFHRYLDQLFFQPGSVLTKTGTYFQVFSQFRKVCYTRLHSALPRMVAAPKAQAPLK 178

Query: 175 LRSD-IPATWQS------KQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHAC 227
           L+SD +P T +           +   G D A   L D FA +   YY+       A+   
Sbjct: 179 LKSDPVPNTVEGFAPPSDSLRALWPAGEDEARRRL-DAFADQQISYYKD-ERDFPAKPGT 236

Query: 228 SRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEME 285
           S++S YLA G +S R+     L+          L A++  + L W     ++F     + 
Sbjct: 237 SQLSAYLAAGVVSPRQCLHAALQTNGGEFESGDLGAITWINELLW-----REFYKHILVG 291

Query: 286 FRCVNRAYDSLLQQSSDAPA-----AQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340
           +  V+R      +  ++A A       LAAWQ   TG+P++DA MR L++TG+++ R+R 
Sbjct: 292 YPRVSR--HRAFRPETEAVAWRNAPKDLAAWQEARTGLPIIDAAMRQLLETGWMHNRLRM 349

Query: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNT---IRIYNPTKQ 397
           ++   LT ++ +DWR G  +  +  +D +   +   +Q  +  TGT++    RI++P  Q
Sbjct: 350 VVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSS-TGTDSAPYFRIFSPLSQ 408

Query: 398 AQEHDSEGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAK 457
           +++ D+EG FI  W+PELA +    +  P         ++ V   + Y + ++DL+ S +
Sbjct: 409 SEKFDAEGVFIKHWLPELAALNKKDVHNP----EAAGGLFGV---ADYPRSIVDLKKSRE 461

Query: 458 QARDRLWQWQKLPAVQA 474
           +A   L  ++ LP+ QA
Sbjct: 462 RA---LAAFRSLPSRQA 475