Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 480 a.a., deoxyribodipyrimidine photolyase from Pseudomonas putida KT2440

 Score =  124 bits (312), Expect = 6e-33
 Identities = 128/492 (26%), Positives = 219/492 (44%), Gaps = 65/492 (13%)

Query: 4   INLVWLKRDLRLTDHAPLQAALTSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAIN 63
           ++L WL+ DLR+ D+  L A+   G PT+ L+L  P        ++    F  ++L  + 
Sbjct: 1   MHLTWLRSDLRIDDNTALSASTERG-PTIALWLVSPGQWQAHDDADCKVDFWLRNLHDLR 59

Query: 64  RDLAQSKGEVLIVTSD-WQTC---FARIAERYAIEAIYSHQEVGLACTFQRDLALAQWCQ 119
           + L +    +LI T D W         I  ++ +++++ ++E G+    +RD A     +
Sbjct: 60  QSLEKLNIPLLIRTIDTWDQAPQAVLDICRQHQVQSVHWNEEYGIN-EQRRDDATRAMLE 118

Query: 120 QHDIVWHEF-------PYAAVIRG-------AQTRKNWDEHWQQVMRSPCCDPDLTRANW 165
           +  I  H         P   + R        +Q +K   EH  + +  P     + R   
Sbjct: 119 KSAIQAHSHLDQLFFRPGTVLTRSGDYFQVFSQFKKTCLEHLHRSL--PALARRVKRQAP 176

Query: 166 LKLDAATL-----GLRSDIPAT---WQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSI 217
           L + +  +     G     PA    W + +A  Q+  S     T++D+   R        
Sbjct: 177 LNIGSDPIPQHVEGFGKTTPALRDHWPAGEAEAQSRLSRFLDETIDDYHHLRDLP----- 231

Query: 218 SSPSLARHACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSS-------RLHW 270
                A+   S++SPYLA G IS R+       H ++AG R    + S+        L W
Sbjct: 232 -----AKPGTSQLSPYLAAGVISPRQCL-----HGALAGNRGEFDSGSTGVQTWINELLW 281

Query: 271 HCHFIQKFESECEMEFRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQ 330
              +        ++      RA    L    DAPA  LAAW+ G TG P++DA MR L+ 
Sbjct: 282 REFYKHILSGYPQVSRHRAFRAQTEALPWR-DAPA-DLAAWEQGRTGFPIIDAAMRQLLH 339

Query: 331 TGYLNFRMRAMLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI- 389
           TG+++ R+R ++   L+ ++ +DWR G  +  +  +D +   +   +Q  A  TGT+ + 
Sbjct: 340 TGWMHNRLRMVVAMFLSKNLLIDWRKGERHFMRHLIDGDLAANNGGWQWSAS-TGTDAVP 398

Query: 390 --RIYNPTKQAQEHDSEGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLK 447
             RI+NP  Q+Q  D +G+FI  WVPEL ++    + +P   T L          + YL 
Sbjct: 399 YFRIFNPVSQSQRFDPQGRFIRHWVPELQELDEKAIHQPIKSTDLFG-------NTSYLS 451

Query: 448 PVMDLEASAKQA 459
           P++DL +S ++A
Sbjct: 452 PIVDLSSSRQRA 463