Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 499 a.a., Deoxyribodipyrimidine photolyase (EC 4.1.99.3) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  114 bits (286), Expect = 6e-30
 Identities = 114/483 (23%), Positives = 200/483 (41%), Gaps = 51/483 (10%)

Query: 6   LVWLKRDLRLTDHAPLQAALTSGRPTLLLYLFEPMLLGDAH----YSERHWRFVWQSL-- 59
           L+W +RDLR  D+A L  AL   R    +++F+  +L D       ++R   F+ +SL  
Sbjct: 8   LMWFRRDLRAEDNAALYHALKVCRRVWCVFVFDTDILDDLQGRGLRADRRVEFIRESLVE 67

Query: 60  -----QAINRDLAQSKGEVLIVTSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLAL 114
                +A+ R+       +++  +        +A++  ++A++++ +   A   +RD  +
Sbjct: 68  LDERLRALGREHGVEGVGLIVRHAPAARAIPALAQQLGVQAVFANHDDEPAA-LERDARV 126

Query: 115 AQWCQQHDIVWHEFPYAAVIRGAQTRKN----------WDEHWQQVMRS------PCCDP 158
                   I+ H      +    +              +   W + +        P    
Sbjct: 127 FGDLAHAGILLHSHKDHVIFERREVLTQAGHAFGVFTPYKNAWLKALTPFHLKAYPVARY 186

Query: 159 DLTRANWLKLDAATLGLRSDIPATWQSKQAGMQTGGSDMAWATLEDFFAR----RGREYY 214
             T A      AA +   SDI     +        G+  A A  EDF  R     G   +
Sbjct: 187 AGTLAGVPPEHAAPVPSLSDIGFEPTNLAQLALPPGASGAHALFEDFVDRIDRYEGARNF 246

Query: 215 RSISSPSLARHACSRMSPYLAWGNISLREM----YQTLLKHWSVAGFRRSLIALSSRLHW 270
            ++  PS        +S +L +G IS+R +    YQ  L+   +AG    L    S L W
Sbjct: 247 PAVKGPSY-------LSAHLRFGTISIRHLASVAYQMHLQ--GMAGASTWL----SELVW 293

Query: 271 HCHFIQKFESECEMEFRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQ 330
              + Q   +   +  +     YD++  +       Q AAW  G TG PLVDA M  + Q
Sbjct: 294 RDFYHQVLANFPHVVDKAFKPEYDAIKFEHGKHAREQFAAWCEGRTGYPLVDAAMAQINQ 353

Query: 331 TGYLNFRMRAMLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYP--QFQMQAGVTGTNT 388
           TGY++ R+R ++ S L   + + W+ G  Y A   +DF+   +    Q+   +G      
Sbjct: 354 TGYMHNRLRMVVASFLVKDLGLHWQWGERYFADHLIDFDLAANNGGWQWASSSGCDAQPW 413

Query: 389 IRIYNPTKQAQEHDSEGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKP 448
            RI+NP  Q+++ D  G+FI +++P+LA +P   +  PW    +E     + L   Y  P
Sbjct: 414 FRIFNPVTQSEKFDPHGKFIRRYLPQLAGLPDAAIHAPWKANEIELAAAGLVLGEGYPPP 473

Query: 449 VMD 451
           ++D
Sbjct: 474 IVD 476