Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., deoxyribodipyrimidine photo-lyase from Serratia liquefaciens MT49

 Score =  109 bits (272), Expect = 2e-28
 Identities = 119/484 (24%), Positives = 205/484 (42%), Gaps = 54/484 (11%)

Query: 5   NLVWLKRDLRLTDHAPLQAALTSGRPTLL-LYLFEPMLLGDAHYSERHWRFVWQSLQAIN 63
           +LVWL+ DLR+TD+  L AA +     +L +++  P        + R   F+   L  + 
Sbjct: 4   HLVWLRNDLRITDNKALHAACSDPEARVLAVFIATPQQWQQHQMAPRQAAFIHAGLLQVQ 63

Query: 64  RDLAQS-------KGEVLIVTSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQ 116
           + LA+        + +    + DW   +     +  ++A++ +++  +    QRD  L Q
Sbjct: 64  QALAERGIPLSYHQCDDFSASVDWLVAYCT---QERVDALFYNRQYEIN-ERQRDQRLEQ 119

Query: 117 W------CQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDA 170
                  CQ  D      P +    G +  K +   +++       + D+      K  A
Sbjct: 120 RLVGQVICQSFDDSLLLPPGSVQTGGGEMYKVYTP-FRKAFIQRLTESDIRSVPAPKPRA 178

Query: 171 ATLGLRSDIPATWQ---SKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHAC 227
                   +P  +    ++  G    G + A   L  F   + ++Y +    P++     
Sbjct: 179 GGALPTPAVPEAFDYPPAEPTGDFPSGEEAALQRLRSFCREQVQDYLKQRDLPAI--DGT 236

Query: 228 SRMSPYLAWGNISLREMYQTLLKHWS--VAGFRRSLIALSSRLHW---HCHFIQKFESEC 282
           S +SPYLA G +S R+ +  L       +           + L W   + H +  + + C
Sbjct: 237 SGLSPYLAIGVLSPRQCFNRLRAECPQVLENPDGGAFGWLNELIWREFYRHLMVAYPALC 296

Query: 283 EMEFRCVNRAY---DSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMR 339
           +      +R +      ++  +D    Q  AWQ G TG P+VDA MR L +TG+++ R+R
Sbjct: 297 K------HRPFIDWTDKVRWRNDRELLQ--AWQQGATGYPIVDAAMRQLNKTGWMHNRLR 348

Query: 340 AMLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNT---IRIYNPTK 396
            +  S L   + +DWR G  Y     LD +   +   +Q  A  TGT+     RI+NPT 
Sbjct: 349 MISASFLVKDLLIDWREGERYFMSQLLDGDLAANNGGWQWAAS-TGTDAAPYFRIFNPTT 407

Query: 397 QAQEHDSEGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASA 456
           Q +  D +G FI KW+PELA VP   + +P      + ++   PL      P++D     
Sbjct: 408 QGERFDPQGTFIRKWLPELADVPDNAIHQPHRWAEQQQRVLDYPL------PIVD----H 457

Query: 457 KQAR 460
           KQAR
Sbjct: 458 KQAR 461