Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 472 a.a., deoxyribodipyrimidine photolyase, FAD-binding (NCBI) from Escherichia coli BW25113

 Score =  111 bits (277), Expect = 6e-29
 Identities = 128/475 (26%), Positives = 198/475 (41%), Gaps = 53/475 (11%)

Query: 5   NLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAIN 63
           +LVW ++DLRL D+  L AA   S    L LY+  P      + S R    +   L  + 
Sbjct: 4   HLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQ 63

Query: 64  RDLAQSKGEVLIVTSDWQTCFARIAERYAIEAIYSHQEVGLACTFQ-------RDLALAQ 116
             LA+    +L    D       I ++   E   +H    L   +Q       RD+ + +
Sbjct: 64  IALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTH----LFYNYQYEVNERARDVEVER 119

Query: 117 WCQQHDIVWHEF------PYAAVIRGAQT--------RKNWDEHWQQVMRSPCCDPDLTR 162
             +  ++V   F      P  AV+ G           +  W +  ++ M      P +  
Sbjct: 120 ALR--NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRS 177

Query: 163 ANWLKLDAATLGLRSDIPATWQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSL 222
           +  ++   +   +  + P   QS            A A L  F      EY +    P++
Sbjct: 178 SGSIEPSPS---ITLNYPR--QSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAV 232

Query: 223 ARHACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHW---HCHFIQKFE 279
                SR+S  LA G +S R+    LL     A    +     + L W   + H I    
Sbjct: 233 --EGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLNELIWREFYRHLITYHP 290

Query: 280 SECEMEFRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMR 339
           S C+   R      D +  QS+ A    L AWQ G TG P+VDA MR L  TG+++ R+R
Sbjct: 291 SLCK--HRPFIAWTDRVQWQSNPA---HLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345

Query: 340 AMLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNT---IRIYNPTK 396
            +  S L   + +DWR G  Y     +D +   +   +Q  A  TGT+     RI+NPT 
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAAS-TGTDAAPYFRIFNPTT 404

Query: 397 QAQEHDSEGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMD 451
           Q ++ D EG+FI +W+PEL  VP  ++ EPW      AQ   V L+ P  +P+++
Sbjct: 405 QGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKW----AQKAGVTLDYP--QPIVE 453