Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., deoxyribodipyrimidine photo-lyase from Erwinia tracheiphila SCR3

 Score =  115 bits (287), Expect = 4e-30
 Identities = 124/478 (25%), Positives = 205/478 (42%), Gaps = 44/478 (9%)

Query: 5   NLVWLKRDLRLTDHAPLQAALT-SGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAIN 63
           +LVWL+ DLR+ D+  L AA   S    L L++  P        + R   F++QSLQ + 
Sbjct: 4   HLVWLRNDLRIHDNTALHAACRDSDARVLALFIATPQQWHSHVMAPRQAAFIYQSLQDVQ 63

Query: 64  RDLAQSKGEVL--IVTSDWQTCFARIA---ERYAIEAIYSHQEVGLACTFQRDLALAQWC 118
           + LA+ KG  L  +   D+    + +A   + + IE ++ + +  +    QRD  + +  
Sbjct: 64  QSLAE-KGIPLHFLQCRDFDASVSELASFCQAHNIERMFYNYQYEVN-ERQRDARVERAL 121

Query: 119 QQHDIVWHEF-------PYAAVIRGAQTRKNWDEHWQQVMRS-----PCCDPDLTRANWL 166
            + DI+   F       P + +    +  K +    + ++R      P C P        
Sbjct: 122 SELDIISQGFDDSLLLAPGSVLTGSGEMYKVFTPFSKALVRRLKEGVPECLPVPKARENA 181

Query: 167 KLDAATLGLRSDIPATWQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHA 226
            L         D P+     Q  +   G   A   L  F  +   +Y +    P++    
Sbjct: 182 PLKKTPTLKPFDYPSEAFDDQ--LFPAGEAAALKRLRAFCQQPAADYPQQRDIPAV--DG 237

Query: 227 CSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHW---HCHFIQKFESECE 283
            SR+S YLA G +S R+    LL+  +       +    + L W   + H +  + S C 
Sbjct: 238 TSRLSVYLATGVLSPRQCLNRLLREHADGLDNSRIFVWLNELIWREFYRHLLVAWPSLCR 297

Query: 284 MEFRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLV 343
            +   +        QQ+       L AWQ G TG P+VDA MR L   G+++ R+R ++ 
Sbjct: 298 HQ-PFIGWTEKVKWQQNG----RHLEAWQQGKTGYPVVDAAMRQLNALGWMHNRLRMIVA 352

Query: 344 SVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEH 401
           S L   + +DWR G  Y     +D +   +   +Q  A  G       RI+NPT Q +  
Sbjct: 353 SFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASCGTDAAPYFRIFNPTTQGERF 412

Query: 402 DSEGQFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPLESPYLKPVMDLEASAK 457
           D EG FI +W+PEL  VP   + +P  W      A+ + V L+ P  +P++D + + K
Sbjct: 413 DEEGAFIRQWLPELKAVPKQHIHQPQAW------AKKHGVSLDYP--QPIVDHKEARK 462