Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 472 a.a., deoxyribodipyrimidine photo-lyase from Escherichia coli ECRC101

 Score =  115 bits (289), Expect = 3e-30
 Identities = 124/451 (27%), Positives = 191/451 (42%), Gaps = 47/451 (10%)

Query: 5   NLVWLKRDLRLTDHAPLQAALTSGRPTLL-LYLFEPMLLGDAHYSERHWRFVWQSLQAIN 63
           +LVW ++DLRL D+  L AA  +    LL LY+  P      + S R    +   L  + 
Sbjct: 4   HLVWFRQDLRLHDNLALAAACRNSSARLLALYIATPRQWAAHNMSPRQAELINAQLNGLQ 63

Query: 64  RDLAQSKGEVLIVTSDWQTCFARIAERYAIEAIYSHQEVGLACTFQ-------RDLALAQ 116
             LA+    +L    D       I ++   E   +H    L   +Q       RD+ + +
Sbjct: 64  IALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTH----LFYNYQYEVNERARDVQVER 119

Query: 117 WCQQHDIVWHEF------PYAAVIRGAQT--------RKNWDEHWQQVMRSPCCDPDLTR 162
             +  ++V   F      P  AV+ G           +  W +  ++ M      P +  
Sbjct: 120 TLR--NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRS 177

Query: 163 ANWLKLDAATLGLRSDIPATWQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSL 222
           +  +K  A ++ L  + P   QS            A A L  F      EY +    P++
Sbjct: 178 SGSIK-PAPSITL--NYPR--QSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAV 232

Query: 223 ARHACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHW---HCHFIQKFE 279
                SR+S  LA G +S R+    LL     A    +     + L W   + H +  + 
Sbjct: 233 --EGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLNELIWREFYRHLMTYYP 290

Query: 280 SECEMEFRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMR 339
           S C+    C   A+   +Q  S+   A L AWQ G TG P+VDA MR L  TG+++ R+R
Sbjct: 291 SLCK---HCPFIAWTDRVQWQSNP--AHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345

Query: 340 AMLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNT---IRIYNPTK 396
            +  S L   + +DWR G  Y     +D +   +   +Q  A  TGT+     RI+NPT 
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAAS-TGTDAAPYFRIFNPTT 404

Query: 397 QAQEHDSEGQFIHKWVPELAQVPVPLLFEPW 427
           Q ++ D EG+FI +W+PEL  VP   + EPW
Sbjct: 405 QGEKFDREGEFIRQWLPELRNVPGKSVHEPW 435