Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 472 a.a., deoxyribodipyrimidine photo-lyase from Escherichia coli ECOR38

 Score =  105 bits (262), Expect = 4e-27
 Identities = 129/472 (27%), Positives = 195/472 (41%), Gaps = 47/472 (9%)

Query: 5   NLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAIN 63
           +LVW ++DLR  D+  L AA   S    L LY+  P      + S R   F+   L  + 
Sbjct: 4   HLVWFRQDLRQHDNLALAAACRNSSVRVLALYIATPRQWAAHNMSPRQAEFINAQLNGLQ 63

Query: 64  RDLAQSKGEVLIVTSDWQTCFARI-----AERYAIEAIYSHQ-EVG-LACTFQRDLALAQ 116
             LA+    +L    D       I     AE       Y++Q EV   A   Q + AL  
Sbjct: 64  IALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQAERALRN 123

Query: 117 W-CQQHD--IVWHEFPYAAVIRGAQT--------RKNWDEHWQQVMRSPCCDPDLTRANW 165
             C+  D  ++    P  AV+ G           +  W +  ++ M      P +  +  
Sbjct: 124 VVCEGFDDGVI---LPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG- 179

Query: 166 LKLDAATLGLRSDIPATWQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARH 225
             +D A   +  + P   Q             A A L  F      EY +    P++   
Sbjct: 180 -SIDPAP-SITLNYPR--QPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAV--E 233

Query: 226 ACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHW---HCHFIQKFESEC 282
             SR+S  LA G +S R+    LL     A    +     + L W   + H +  +   C
Sbjct: 234 GTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLNELIWREFYRHLMTYYPLLC 293

Query: 283 EMEFRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAML 342
           +     V   +   +Q   +   A   AWQ G TG P+VDA MR L  TG+++ R+R + 
Sbjct: 294 KHRPFIV---WTDRVQWQRNP--AHFKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMIT 348

Query: 343 VSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNT---IRIYNPTKQAQ 399
            S L   + +DWR G  Y     +D +   +   +Q  A  TGT+     RI+NPT Q +
Sbjct: 349 ASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAAS-TGTDAAPYFRIFNPTTQGE 407

Query: 400 EHDSEGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMD 451
           + D EG+FI +W+PEL  VP  ++ EPW      AQ   V L+ P  +P++D
Sbjct: 408 KFDREGEFIRQWLPELRDVPGKVVHEPWKW----AQKAGVTLDYP--QPIVD 453