Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., deoxyribodipyrimidine photolyase, FAD-binding from Escherichia coli BL21

 Score =  117 bits (293), Expect = 9e-31
 Identities = 131/474 (27%), Positives = 201/474 (42%), Gaps = 51/474 (10%)

Query: 5   NLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAIN 63
           +LVW ++DLRL D+  L AA   S    L LY+  P      + S R    +   L  + 
Sbjct: 4   HLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQ 63

Query: 64  RDLAQSKGEVLIVTSDWQTCFARIAERYAIEAIYSHQEVGLACTFQ-------RDLALAQ 116
             LA+    +L    D       I ++   E   +H    L   +Q       RD+ + +
Sbjct: 64  IALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTH----LFYNYQYEVNERARDVEVER 119

Query: 117 WCQQHDIVWHEFPYAAVIR-GAQTRKNWDEH---------WQQVMRS---PCCDPDLTRA 163
             +  ++V   F  + ++  GA    N + +         W + +R     C      R+
Sbjct: 120 ALR--NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRS 177

Query: 164 NWLKLDAATLGLRSDIPATWQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLA 223
           +     A ++ L  + P   QS            A A L  F      EY +    P++ 
Sbjct: 178 SGSIEPAPSITL--NYPR--QSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAV- 232

Query: 224 RHACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHW---HCHFIQKFES 280
               SR+S  LA G +S R+    LL     A    +     S L W   + H +  + S
Sbjct: 233 -EGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLSELIWREFYRHLMTYYPS 291

Query: 281 ECEMEFRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340
            C+    C   A+   +Q  S+   A L AWQ G TG P+VDA MR L  TG+++ R+R 
Sbjct: 292 LCK---HCPFIAWTDRVQWQSNP--AHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346

Query: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNT---IRIYNPTKQ 397
           +  S L   + +DWR G  Y     +D +   +   +Q  A  TGT+     RI+NPT Q
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAAS-TGTDAAPYFRIFNPTTQ 405

Query: 398 AQEHDSEGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMD 451
            ++ D EG+FI +W+PEL  VP   + EPW      AQ   V L+ P  +P++D
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKW----AQKAGVMLDYP--QPIVD 453