Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 490 a.a., Deoxyribodipyrimidine photo-lyase from Azospirillum sp. SherDot2

 Score =  107 bits (266), Expect = 1e-27
 Identities = 120/493 (24%), Positives = 200/493 (40%), Gaps = 61/493 (12%)

Query: 6   LVWLKRDLRLTDHAPL----QAALTSGRPTLLLYLFE-----PMLLGDAHYSERHWRFVW 56
           +VW + DLRL D+  L    QA+   G P + LY+ E     P  LG A   +R W  + 
Sbjct: 7   IVWFRNDLRLADNPALTAAAQASAERGAPVIPLYILEEETGDPWPLGGA---QRWW--LH 61

Query: 57  QSLQAINRDLAQSKGEVLIVTSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQ 116
            SL+ +    A+    +++   + +    ++      + +  ++    A T  RD A+ +
Sbjct: 62  GSLERLATCCARHGSPLVLRRGEPEAVLEKLIAETGADCVLWNRRYAPAQT-ARDAAIKE 120

Query: 117 WCQQHDIVWHEF-------PYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLD 169
             +   +    F       P+    +     K +   W+ +  S   DP L       L 
Sbjct: 121 RLKARGVDARSFNAGLLAEPWTVKNKSGGPFKVFTPFWRHL--SATLDPPLPTRAPAALT 178

Query: 170 AATLGLRSDIPATWQ------SKQAGMQ---TGGSDMAWATLEDFFARRGREYYRSISSP 220
           A    L SD   +W          AG++     G   A + L DF       Y      P
Sbjct: 179 APKSALASDALESWDLLPAKPDWAAGLRKRWVPGETAARSRLADFLDGPVGVYGTERDRP 238

Query: 221 SLARHACSRMSPYLAWGNISLREMYQTLLKHWS---------VAGFRRSLIALSSRLHWH 271
                  S +SPYLA+G I  R+++    +H +         V  F R +     + H  
Sbjct: 239 D--HPGTSALSPYLAFGEIGPRQVWHAA-RHAADARPELAPGVEVFLREIGWREFQHHLL 295

Query: 272 CHFIQKFESECEMEFRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQT 331
            H  +  +S  +  F       D          AA L AWQ G TG P+VDA MR L +T
Sbjct: 296 HHAPELPDSPLDRRFADFPWRKD----------AAGLRAWQRGRTGYPIVDAGMRQLWET 345

Query: 332 GYLNFRMRAMLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTI 389
           G+++ R+R ++ S L   + + W+ G  +     +D +   +   +Q  A  G       
Sbjct: 346 GWMHNRVRMIVASFLIKDLLLPWQEGERWFWDTLVDGDLAQNAGNWQWVAGCGADAAPFF 405

Query: 390 RIYNPTKQAQEHDSEGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPV 449
           R++NP  Q ++ D +G ++ ++VPEL ++P   + +PW       +   V L   Y +P+
Sbjct: 406 RVFNPVLQGEKFDPQGDYVRRYVPELDRLPSRWIHQPWAAPTEVLRQAGVRLGDDYPRPI 465

Query: 450 MDLEASAKQARDR 462
           +D       ARDR
Sbjct: 466 LDHAV----ARDR 474