Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 474 a.a., Deoxyribodipyrimidine photo-lyase from Alteromonas macleodii MIT1002

 Score =  122 bits (306), Expect = 3e-32
 Identities = 115/479 (24%), Positives = 211/479 (44%), Gaps = 37/479 (7%)

Query: 4   INLVWLKRDLRLTDHAPLQAALTSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAIN 63
           ++++W ++DLR+ D+  L AA   G+  + +Y+++               ++  SL ++N
Sbjct: 5   VSIMWFRQDLRVKDNPALNAACDMGK-IVPIYIYDDTAPNGREPGGASKWWLHHSLSSLN 63

Query: 64  RDLAQSKGEVLIVTSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQWCQQHDI 123
           + L    G + I   D QT    + + +  + I+ ++         RD  + +   +HD 
Sbjct: 64  KRL---NGHLQIFKGDPQTLIPNLMKSFNAKGIFWNR-CYEPWQINRDKTIKKTLIEHDY 119

Query: 124 VWHEF-------PYAAVIRGAQTRKNWDEHWQ------QVMRSPCCDPDLTRANWLKLDA 170
             H         P   + +     + +  +++      +  R P   P   R  +  +D 
Sbjct: 120 EAHSCNGSLLWEPMKVLKKDGTPYRVFTPYYKKGCLQVEEPRYPKAPP--ARITYADVDN 177

Query: 171 ATLGLRS-DI--PATWQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHAC 227
            + GL S D+     W +      + G D A   L DF     R+Y      PS   +  
Sbjct: 178 DSDGLTSLDLLPSIDWDATIEKEWSPGEDGAADNLADFIENSARKYKDGRDIPS--ANGT 235

Query: 228 SRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWH---CHFIQKFESECEM 284
           SR+SP+L +G +S  +++  +   +  +   +S+    S L W     + +  F +    
Sbjct: 236 SRLSPHLHFGEVSPNQVWYAIKDKFGNSE-DKSIETYLSELGWREFSYYLLFHFPTLPNK 294

Query: 285 EFRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVS 344
            F   N  +D    ++    A  L AWQ G+TGIP+VDA MR L QTGY++ R+R ++ S
Sbjct: 295 NF---NEKFDKFPWRTD---AKALKAWQKGNTGIPIVDAGMRELWQTGYMHNRVRMIVGS 348

Query: 345 VLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHD 402
            L  ++ + W  G  +     LD +   +   +Q  A  G       RI+NP  Q ++ D
Sbjct: 349 FLVKNLLLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFD 408

Query: 403 SEGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARD 461
            +G ++ K+ PEL ++    + +PW       +   + L   Y KP++DL+AS ++A D
Sbjct: 409 KKGNYVRKYCPELKKLSDKYIHKPWEAPSAILKDAGIELGKEYPKPIVDLKASRQRALD 467