Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., DNA photolyase from Agrobacterium fabrum C58

 Score =  115 bits (288), Expect = 3e-30
 Identities = 111/471 (23%), Positives = 198/471 (42%), Gaps = 44/471 (9%)

Query: 6   LVWLKRDLRLTDHAPLQAALTSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAINRD 65
           +VW ++DLRL+D+  L AA+  G P + +Y+ E    G    ++  W  +  SL A++  
Sbjct: 9   IVWFRKDLRLSDNLALLAAVEHGGPVIPVYIREKSA-GPLGGAQEWW--LHHSLAALSSS 65

Query: 66  LAQSKGEVLIVTSDWQTCFARIAERYAIEAIY---SHQEVGLACTFQRDLALAQWCQQHD 122
           L ++ G +++ + D +     +      + +     +   G+A     D AL Q  +   
Sbjct: 66  LEKAGGRLVLASGDAERILRDLISETGADTVVWNRRYDPTGMAT----DKALKQKLRDDG 121

Query: 123 IVWHEF-------PYAAVIRGAQTRKNWDEHWQQVMRS-----PCCDPDLTRAN--WLKL 168
           +    F       P     +     + +   W+ +  S     P   P    A   W K 
Sbjct: 122 LTVRSFSGQLLHEPSRLQTKSGGPYRVYTPFWRALEGSDEPHAPADPPKSLTAPKVWPKS 181

Query: 169 DAATLGLRSDIPATWQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACS 228
           +  +          W    + + T G   A   L+DF     + Y      P  A+ A S
Sbjct: 182 EKLSNWKLLPTKPDWAKDFSDIWTPGETGALDKLDDFIDGALKGYEEGRDFP--AKPATS 239

Query: 229 RMSPYLAWGNISLREMYQT---LLKHWS---VAGFRRSLIALSSRLHWHCHFIQKFESEC 282
            +SP+LA G IS   ++     L +H +   ++ FR+ ++      H   HF +  E   
Sbjct: 240 LLSPHLAAGEISPAAVWHATKGLSRHIASNDISRFRKEIVWREFCYHLLFHFPELGEKNW 299

Query: 283 EMEFRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAML 342
                  N ++D+   +  +       AW  G TG P+VDA MR L Q G ++ R+R ++
Sbjct: 300 -------NDSFDAFSWRDDEK---SFKAWTRGMTGYPIVDAGMRQLWQHGTMHNRVRMIV 349

Query: 343 VSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQE 400
            S L  H+ +DWR G  +     +D +P  +   +Q  A  G   +   RI+NP  Q ++
Sbjct: 350 ASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGEK 409

Query: 401 HDSEGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMD 451
            D +G ++ ++VPEL ++    + +P+       +   V L   Y  P++D
Sbjct: 410 FDGDGDYVRRFVPELEKLERKYIHKPFEAPKDALKKAGVELGKTYPLPIVD 460