Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., Deoxyribodipyrimidine photo-lyase from Acinetobacter radioresistens SK82

 Score =  120 bits (301), Expect = 1e-31
 Identities = 129/499 (25%), Positives = 216/499 (43%), Gaps = 54/499 (10%)

Query: 1   MEKINLVWLKRDLRLTDHAPLQAALTSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQ 60
           M    LVW ++DLR+ DH+ L  A  +G P + L    P+       +        + L+
Sbjct: 1   MSVYQLVWFRQDLRIVDHSALWHARQTG-PCIALVTLSPVQWRQHDDAVIKIDLYLRQLK 59

Query: 61  AINRDLAQSKGEVLIVTSD-WQTC---FARIAERYAIEAIYSHQEVGLACTFQRDLALAQ 116
            +   L Q    ++I T   W+          +  +++ I++H E G+    QRD    Q
Sbjct: 60  VLKEQLKQLNIPIIIQTIPLWKEVPEFLLECCQSLSVQQIHAHIEAGIN-EQQRDQDCQQ 118

Query: 117 WCQQHDIVWHEFPYAAVIR-GAQTRKNWDEHW-----------QQVMRSPCCDPDLTRAN 164
                 I    +    +   G+ T +N   +            +  +  P C  ++T  N
Sbjct: 119 LLDTSGIALTLYQDRTLFPFGSITNQNGQPYQVFGAFKKACYSRLEIALPKCYTEITAQN 178

Query: 165 WLKLDAATLGLRS--------DIPATWQSKQAGMQTGGSDMAWATLEDFFARRGREYYRS 216
            + L A     ++        DIP     +Q  +     + A   LE F     + Y+  
Sbjct: 179 PITLPALDQFQQTVPDIRQLCDIPVPESIQQ--LWPACENHAHTLLEQFLENHIQHYHIE 236

Query: 217 ISSPSLARHACSRMSPYLAWGNISLREMYQTLLKHWS---VAGFRRSLIALSSRL--HWH 271
              P  A    S++S YL  G +S+R+  Q L +H S   V       I L   L   ++
Sbjct: 237 RDFP--AHSGTSQLSAYLNIGVLSIRQCIQALFRHQSGYFVPEQEGQSIWLDELLWREFY 294

Query: 272 CHFIQKFESECE-MEFRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQ 330
            H +  F +  + + F+   R     +    D  A  L AWQ G TGIP+VDA MR L+ 
Sbjct: 295 QHILYLFPNVSKYLPFKANARN----IPWQDDKTA--LTAWQQGQTGIPIVDAGMRQLLV 348

Query: 331 TGYLNFRMRAMLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI- 389
           TG+++ R+R +    L  ++ +DWR G  +  Q  +D +   +   +Q  A  TGT+++ 
Sbjct: 349 TGWMHNRVRMITAMFLCKNLLIDWRQGEQWFMQHLIDGDLAANNGGWQWCAS-TGTDSVP 407

Query: 390 --RIYNPTKQAQEHDSEGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLK 447
             RI+NP  Q+++ D EGQ+I  W+PELA +    +  P+     E++  Q   +  Y K
Sbjct: 408 YFRIFNPVSQSRKFDPEGQYIRTWIPELAHLDAKTIHAPY-----ESKTVQ---QLDYPK 459

Query: 448 PVMDLEASAKQARDRLWQW 466
           P++DL+ S  +A D   Q+
Sbjct: 460 PIVDLKYSRARAIDHFKQY 478