Pairwise Alignments

Query, 468 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 510 a.a., Inner-membrane proton/drug antiporter (MSF type) of tripartite multidrug efflux system from Variovorax sp. SCN45

 Score =  154 bits (390), Expect = 5e-42
 Identities = 125/448 (27%), Positives = 208/448 (46%), Gaps = 22/448 (4%)

Query: 7   PAADAPHPRIIFASVALVIALGSLEKSIVTTPLALIGQDLSAGT-ALTWVITAYLLAATA 65
           P    PH  +I  S+ L   + +L+ +I    L  +   L A    +TWV+T+Y++A+  
Sbjct: 5   PGTKVPHRGMITISIMLATIMQALDTTIANVALPHMQGSLQASQDQITWVLTSYIVASAI 64

Query: 66  VLPVYGKLSDLFGRVRMLNISIGIFIVGSAMCTFAVDLPTLIGARVVQGIGGGGLIALAF 125
            LP+ G L   +GR R+  IS+  F V SA+C  A  L  ++ AR++QGI G  L+ L+ 
Sbjct: 65  ALPLTGWLCGHWGRRRVFIISVIGFTVASALCGLATSLVGIVAARLLQGIFGAALVPLSQ 124

Query: 126 TVIADSIPAREVGKYQGYISAVYAVSSVAGPLLGGYFADHLSWRWVFGINLPLGMVALYM 185
            V+ D  P  +VG+      A   V  + GPLLGG+  ++  WRWVF INLP+G+ A + 
Sbjct: 125 AVLLDINPREKVGQAMAIWGAGIMVGPILGPLLGGWLTENFDWRWVFFINLPVGIFAFWG 184

Query: 186 VNRHLRHLNQKRHSRFDWLGAGLLMLTTTLLLLQLSSHSFLP--AGW-----GAFALLLC 238
           + R+L   ++ +  + D  G   L L   +L L L     L     W      A AL+  
Sbjct: 185 IARYLPE-SRPQGEKLDIFGFVTLSLAIGMLQLFLDRGEQLDWFDSWEIKLEAAAALVAF 243

Query: 239 LVLLILVERQVSDPILPARLARLPSYLTAIGLIMASQMLMFALLVYMPLQLQWQKGFSPS 298
              ++              L +  +++T +       M++FA +  +P  LQ   G+   
Sbjct: 244 GFFVVHTWTVQGVSFFDRDLLKDRNFVTGLLFAFIVGMILFATMALLPNFLQGLMGYPVV 303

Query: 299 QSGTVMVIFMFSITTGAYLGGKWVARSGRYKALVVSGFLLAAVAIWQ-----IHYDLWVH 353
            +G V             + G+ V +    +A++  GF L A +++Q     +  D  + 
Sbjct: 304 YTGQVTAPRGVGTMIAMIIVGRLVQKVD-VRAIMAVGFGLTAFSLYQMTRLTLQMDSTLI 362

Query: 354 LSLG-IGGLGLGFTLPSLNVVVQSVLPARDRGIGMSLFNFGRELGGALGVAFCSALF--- 409
           +  G I GLG+GFT   L+    + L  R R  G  +F+  R +G ++G++   AL    
Sbjct: 363 IVSGFIQGLGIGFTFVPLSTATFATLAPRLRNQGTPIFSLLRNIGSSVGISIVQALLTEG 422

Query: 410 --YLRVPQSVTVSEHGSQASSVTPDVLA 435
                   + TV+  G+QA S  P +++
Sbjct: 423 SSKAHAQIAATVAP-GNQALSTLPQMMS 449