Pairwise Alignments

Query, 450 a.a., molecular chaperone from Vibrio cholerae E7946 ATCC 55056

Subject, 556 a.a., Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription (NCBI) from Escherichia coli BW25113

 Score = 43.9 bits (102), Expect = 1e-08
 Identities = 56/230 (24%), Positives = 88/230 (38%), Gaps = 58/230 (25%)

Query: 3   IGFDYGTANCSVASMQDGRPVLIPLEGDSLYIPSTLAAPTRESVSEHLFRHRHIAPADAL 62
           IG D GT N  +A  +DG   LIP +      PS ++          +  + HI      
Sbjct: 8   IGIDLGTTNSLIAVWKDGAAQLIPNKFGEYLTPSIIS----------MDENNHI------ 51

Query: 63  GEQLLRRSVASNREEGIDLQFADVVFGQAALDLYLSDPHEVYYVKSPKSFLGAMGLHD-- 120
                                   + G+ A+    S P      K+   F  AMG +   
Sbjct: 52  ------------------------LVGKPAVSRRTSHPD-----KTAALFKRAMGSNTNW 82

Query: 121 -IQLSFFE--DLVCAMMANIKAQAEAHSDAVIQDAVIGRPVNFHGRGGEDSNQQAENILR 177
            +    F   +L   ++ ++K  AE      I+D VI  P  F       S++Q ++  R
Sbjct: 83  RLGSDTFNAPELSSLVLRSLKEDAEEFLQRPIKDVVISVPAYF-------SDEQRKHT-R 134

Query: 178 RAATRAGFRHLEFQFEPVAAGLEYEATLTEDKTVLVVDIGGGTTDCSLIQ 227
            AA  AG   +    EP AA + Y     ++   LV D+GGGT D ++++
Sbjct: 135 LAAELAGLNAVRLINEPTAAAMAYGLHTQQNTRSLVFDLGGGTFDVTVLE 184