Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 1343 a.a., ATP-dependent RNA helicase HrpA from Rhodanobacter sp000427505 FW510-R12

 Score =  974 bits (2518), Expect = 0.0
 Identities = 557/1356 (41%), Positives = 796/1356 (58%), Gaps = 71/1356 (5%)

Query: 6    PTPDSAAQPKANSAASLKKALGECLIKDRFRFSKRIDGASKIKNESARNAVFDEIALDIA 65
            P  D+ +    ++ + L+  L     +D  R   R    S+  +E         +  DI 
Sbjct: 4    PMNDTHSTANDSAGSGLRGQLETVCSRDFGRLLGRWRALSRRPDEDK----LASLRADIE 59

Query: 66   QSMMVVEQRKQQMPKIEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICA 125
            +S      R    P I     LP+S +  DI + I  HQVV++AGETGSGKTTQLPK+C 
Sbjct: 60   RSAAKRRARAVAKPPIRLDESLPISARGKDIVKLIREHQVVVIAGETGSGKTTQLPKLCL 119

Query: 126  ELGRGKYGLIGHTQPRRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTD 185
              GRG+ G+IG TQPRRLAARSVA R+AEE+ T LG  VG++VRF DQ+S+++ IK MTD
Sbjct: 120  AAGRGEAGMIGCTQPRRLAARSVARRVAEELGTPLGEVVGFQVRFNDQVSERSLIKFMTD 179

Query: 186  GILLAEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPE 245
            GILLAE Q D +L+ YDT+IIDEAHERSLNIDF+LGYLK+L  +RP+LK+I+TSATID  
Sbjct: 180  GILLAETQGDPWLSAYDTLIIDEAHERSLNIDFLLGYLKRLAIKRPELKIIVTSATIDTA 239

Query: 246  RFSKHFSNAPIIEVSGRTYPVEVRYRPLAGD---DDSESDRDQLEGIFQAVDELCDE--- 299
            RF++HF  AP++EV GR YPVE R+RP+ G      ++SD D  +G  + +  + DE   
Sbjct: 240  RFAEHFDGAPVVEVEGRAYPVETRWRPVGGQSHFSQAKSDSDHRQGSAEHIAAVLDEITR 299

Query: 300  --GLGDILIFMNGEREIRDTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPHAGRRIVL 357
                GD+L+F+ GEREIRD    LS+R  R+TEI+PLYARLSAGEQ+++F+P   RR+VL
Sbjct: 300  GDPRGDVLVFLPGEREIRDAHLLLSRRQYRETEIMPLYARLSAGEQDRVFKPGVKRRVVL 359

Query: 358  ATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEG 417
            ATNVAETSLTVP I+YVID GTAR+ RYS R++++RL +EPISQA+A+QRKGRCGR   G
Sbjct: 360  ATNVAETSLTVPRIRYVIDTGTARVKRYSQRSQLERLHVEPISQAAADQRKGRCGRVGPG 419

Query: 418  ICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGV 477
            IC RLY E DF  R  FTDPE+LR++LA+VIL+M AL LG+++ FPF+EAPD R + DG 
Sbjct: 420  ICYRLYDEADFAGRAAFTDPELLRSSLANVILRMLALKLGEVDEFPFLEAPDPRVVADGF 479

Query: 478  RLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALS 537
            R L E+ AI     D  ++LT  G+ LA+LPID +LARM++E  +L  L+E+++I + LS
Sbjct: 480  RRLTEISAI-----DEGRKLTAIGRTLAKLPIDVQLARMLVEGEQLHALRELLVIVAFLS 534

Query: 538  IQDPRERPSDKQQSADDKHRRFNHEDSDFLTLVNLWHYIGQQQKALTSNQFRRQCKLDYL 597
            IQDPRERP+D +Q AD  H  F    SDF  ++NLW       + LT ++ R  C   +L
Sbjct: 535  IQDPRERPADARQQADAAHAAFADPKSDFAGVLNLWRAYHDAHEELTQSKLRDWCSRHFL 594

Query: 598  NYLRVREWQDVYTQLHQSTREMGFKLNDEPGS---------------------------- 629
            +++R+REW++++ QL     E+G+KL+ +P +                            
Sbjct: 595  SFMRMREWRELHRQLLLVVGELGWKLDGQPQAARPAPPPARRGRLGGGEAFKIKSTPPQP 654

Query: 630  ----------------YHAVHSAILVGLLSHIGMKDQEKNEYHGARNARFNIFPASGLFK 673
                            Y +VH A+L GL + +G KD EK  Y   R  +F +FP S L K
Sbjct: 655  SPASRGGSESVDADRLYESVHRALLAGLPTQVGRKD-EKGVYQSTRERKFQLFPGSALAK 713

Query: 674  KQPKWVMSAELVET-SKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHWSKKNAAVMAYEK 732
              P WV  A++++   ++W  + A++EP WIE  A HL +    +PHWSKK   V+AYE+
Sbjct: 714  APPNWVFCAQILDVGGRVWGMMNARVEPLWIEQQAAHLLRTHCRDPHWSKKRGCVVAYEQ 773

Query: 733  VMLYGIPIVPKRLVNYGTIDPVLSREIFIRSALVEGDWETKHAFFKQNRALLAEVEELEH 792
            V L+G+ +V KR V +   DP L+  IF+R ALV GD +TK  F + N+ +L E + +E 
Sbjct: 774  VSLFGLVLVEKRPVTFQRQDPALAHAIFLREALVRGDIDTKVDFVRANQRVLEEAQGIEA 833

Query: 793  KSRRRDILVDDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLSFEKEMLFKGDAS 852
            K RR  ++  ++EL  F++ ++  E+ S R  D W++ A       L +  + +  G A 
Sbjct: 834  KQRREGLIRHEDELVAFFEGKLPEEIASSRALDVWYRKARPAEQAALRWSLDDVMAGGAG 893

Query: 853  HITDLDYPNFWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPHGFDWQIPGLRHE 912
             +    +P     G  + +L Y+F PG+ +DGVT+ +PL +LN +     +W +PGL  +
Sbjct: 894  -LDARAFPAALEIGAQRYRLEYRFVPGDEADGVTLQLPLAMLNALRLARCEWLVPGLLAD 952

Query: 913  LVVSLIKSLPKTLRKNFVPAPNYADAFLARVTPFEMPLLDAMEKELRRMTGVTVLREDWK 972
             V  LI+ LPK LR+NFVPAP++A AF+    P +  L+ A+   L+R TGV +   D+ 
Sbjct: 953  KVAELIRGLPKALRRNFVPAPDFARAFVEAEAPRDESLVKALAAFLQRATGVELAAGDFT 1012

Query: 973  LDQLPAHLKITYRAVDHRNRKLNESCDLHELKESLKEKVQETLSQVADDDIEQRDLHTWS 1032
              +LP HL + YR  D R R L    DL  L+   +   +E  S+  D ++ + D+ +W 
Sbjct: 1013 AVELPPHLLMRYRLHDERGRTLASGRDLAALRGQWEGPAREAFSRKTDLELTREDVASWD 1072

Query: 1033 FGELPKVYQQKRGGFEVRAYPALVDKKDSVEIKLFETEQEQLSAMRAGQRRLILLNVPSP 1092
            F E+P   + + G   + A+PALVD  ++V +++FE   E   A R G  RL+   + S 
Sbjct: 1073 FEEIPAQLRSEGG---LTAFPALVDLGETVALRVFERSDEARVAHRQGVVRLLRNALASE 1129

Query: 1093 IKYLHANLPNKSKLGLYFNPYGKVLDLIDDCIACGVDKLIEERGGMVWEPQAFEALKEHV 1152
             K     LP    L L + P G V  L +D +  G   L++     V    AFE+L+   
Sbjct: 1130 AKQARRRLPIGHALALKYAPLGGVEGLREDLLEGGFADLLQRHELDVRTAGAFESLRTQC 1189

Query: 1153 RAELGDTVVEIAKQVETILTTAYNINKRLKGKVDFTMAFALSDVKAQIEGLIFSGFATEC 1212
              EL    VE  K  E I+    ++   L+  +      +  D++ Q + L+  GF  E 
Sbjct: 1190 ARELFGAGVERLKLAEPIIEAQADLKPWLQPPLLGFARASHDDLREQFDALLVPGFLREL 1249

Query: 1213 GWKRLPDILRYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYKELLNKIPKGMAIPDNV 1272
               RL    RY++A+  R E+L  DP KD+  +L+   V   ++  L     G A P  +
Sbjct: 1250 PPARLAHYPRYLKAMRLRGERLRQDPAKDQQRLLQ---VLPYWRAYLQHRAAG-ADPAGL 1305

Query: 1273 REIRWMLEELRVSYFAQQLGTPYPVSDKRIINAIEA 1308
             E+RW++EE RVS FAQ+L T  PVS KR+  A+ A
Sbjct: 1306 DELRWLIEEWRVSLFAQELKTAEPVSAKRLAKALAA 1341