Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 835 a.a., ATP-dependent RNA helicase HrpB from Xanthobacter sp. DMC5

 Score =  254 bits (649), Expect = 2e-71
 Identities = 159/439 (36%), Positives = 245/439 (55%), Gaps = 20/439 (4%)

Query: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146
           LP+     DI   +A     ++    G+GKTT++P    +      G I   +PRRLAAR
Sbjct: 6   LPIDAVLGDIRSTLASTSCAVLVAPPGAGKTTRVPLALLDEPWAAGGKILVLEPRRLAAR 65

Query: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTIII 206
           + A R+A+ +   +GG VG++ R   ++S +T+I+++T+GI    + +D  L+    ++ 
Sbjct: 66  AAARRMAQTLGEAVGGTVGFRTRLASEVSRRTRIEVVTEGIFTRMVLDDPELSGIAAVLF 125

Query: 207 DEAHERSLNIDFILGY-LKQLLPRRPDLKVIITSATIDPERFSKHF---SNAPIIEVSGR 262
           DE HERSL+ D  L   L      R DL+++  SAT+D  R +      + AP+IE  GR
Sbjct: 126 DEFHERSLDADLGLALALDSQRGLRDDLRLLAMSATLDGARVASLMGLGAPAPVIESEGR 185

Query: 263 TYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADALS 322
            +PVE  Y  L  D  +  DR   + I +A++       G IL F+ G  EIR T + L 
Sbjct: 186 AFPVETAY--LGRDPRTPIDRQMTDAIRRALERED----GSILAFLPGAAEIRRT-ETLL 238

Query: 323 KRNLRD--TEIVPLYARLSAGEQNKIF--QPHAGRRIVLATNVAETSLTVPGIKYVIDPG 378
              +RD   ++V L+  L A EQ++     P   R++VLAT++AETSLT+ G++ V+D G
Sbjct: 239 LDAVRDPKVDVVALFGALDAAEQDRAVLPAPEGRRKVVLATSIAETSLTIEGVRVVVDSG 298

Query: 379 TARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPE 438
            AR+ R+     + RL    +S+A+A+QR+GR GRTE G+C RL+SE +  S P F  PE
Sbjct: 299 LARVPRFEPDVGLTRLETVRVSRAAADQRRGRAGRTEPGVCYRLWSEGETASLPAFATPE 358

Query: 439 ILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLT 498
           IL  +L  ++L +  +G+ D  A PF++ P    + +   LL  LGA+     D  + +T
Sbjct: 359 ILAADLTGLVLDLARVGVRDPAALPFLDPPPAPAVTEAKALLRLLGAL-----DADEAVT 413

Query: 499 ESGKQLARLPIDPRLARMV 517
             G+ +ARLP+ PRLA MV
Sbjct: 414 PLGRLMARLPLPPRLAHMV 432