Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 836 a.a., ATP-dependent helicase from Pseudomonas simiae WCS417

 Score =  243 bits (621), Expect = 4e-68
 Identities = 157/468 (33%), Positives = 250/468 (53%), Gaps = 33/468 (7%)

Query: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHT----QPRR 142
           LP+ +    +  A+A+    ++    G+GKTT++P         +  L G T    +PRR
Sbjct: 4   LPIDEVLPALRDALANRHEAVLEAPPGAGKTTRVPLALLN----EPWLAGQTILMLEPRR 59

Query: 143 LAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYD 202
           LAAR+ A R+A E+  ++G  VGY++R   ++   T+I+++T+GIL   +Q+D  L+   
Sbjct: 60  LAARAAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVVTEGILTRRLQDDPALDGVG 119

Query: 203 TIIIDEAHERSLNIDFILGYL---KQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEV 259
            +I DE HERSL+ D  L      ++L      LK+++ SAT++ ER +    NAPI+  
Sbjct: 120 LLIFDEFHERSLDADLALALSLNGRELFRDDQPLKILLMSATLEGERLAGLLDNAPILRS 179

Query: 260 SGRTYPVEVRY-RPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIR--- 315
            GR +PV++R+ RP    +  E        + Q V +   +  G +L+F+ G+ EIR   
Sbjct: 180 EGRMFPVQMRWGRPYQPGEFIEPR------VVQTVLDALQDETGSVLVFLPGQAEIRRVN 233

Query: 316 -DTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPH--AGRRIVLATNVAETSLTVPGIK 372
              ADAL +R   D  + PL+  L    Q     P     R++VLATN+AETSLT+ G++
Sbjct: 234 QQLADALGER--ADVVLCPLHGELDLNAQRAAIDPAPVGKRKVVLATNIAETSLTINGVR 291

Query: 373 YVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRP 432
            VID G AR+ R+   + + RL  + IS+ASA QR GR GR E G+C RL+SE+      
Sbjct: 292 VVIDAGLARVPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEDQHEGLA 351

Query: 433 EFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKD 492
            +   EIL  +LA + LQ+   G+   +   +++ P          LL  LGA++++   
Sbjct: 352 AYGSAEILAADLAGLALQLARWGVTPTQ-LVWLDVPPTAAYAQAQDLLGRLGALDEE--- 407

Query: 493 PKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQD 540
              +LT  G+++A LP  PR+A ++L    LG       +A+ L  +D
Sbjct: 408 ---KLTAHGQKMAELPAHPRIAHLLLRGQALGLAATACDVAALLGERD 452