Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 1303 a.a., ATP-dependent helicase HrpA from Pseudomonas simiae WCS417

 Score = 1201 bits (3106), Expect = 0.0
 Identities = 641/1302 (49%), Positives = 855/1302 (65%), Gaps = 25/1302 (1%)

Query: 15   KANSAASLKKALGECLIKDRFRFSKRIDGASKIKNESARNAVFDEIALDIAQSMMVVEQR 74
            +A +   L   L   ++ DR R  +++    K  +E         +    AQ    V  R
Sbjct: 4    QAPAIDQLLNNLDHAMLADRHRLRRQLLELRKKPDEEKLAQWVARMQASCAQ----VTAR 59

Query: 75   KQQMPKIEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGL 134
            +  +P I Y   LP++ KRD+I +A+  HQV+I+AGETGSGKTTQLPKIC E+GRG++GL
Sbjct: 60   RASLPVIRYDDSLPIAAKRDEIKEALNKHQVLIIAGETGSGKTTQLPKICLEIGRGQFGL 119

Query: 135  IGHTQPRRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQN 194
            IGHTQPRR+AARSVA+R+AEE+ T LG  VGY+VRF DQ    T IKLMTDGILLAE QN
Sbjct: 120  IGHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQN 179

Query: 195  DRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFSNA 254
            DR+L +YDTII+DEAHERSLNIDF+LGYLK LLPRRPDLKVIITSATID ERFSKHF +A
Sbjct: 180  DRYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDA 239

Query: 255  PIIEVSGRTYPVEVRYRPLAGDDDSESDR--DQL---EGIFQAVDELCD------EGLGD 303
            PI+EVSGRT+PV+  YRPL  + D E +R  D L   + I   +DE+           GD
Sbjct: 240  PIVEVSGRTFPVDTWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGD 299

Query: 304  ILIFMNGEREIRDTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATNVAE 363
            +L+F+ GEREIRD A+ L K  L+ TEI+PLYARLS  EQ +IFQ H GRR+VLATNVAE
Sbjct: 300  VLVFLPGEREIRDAAEVLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAE 359

Query: 364  TSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLY 423
            TSLTVPGI+YVID GTARISRYSYR KVQRLPIE ISQASANQRKGRCGR E GIC+RLY
Sbjct: 360  TSLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLY 419

Query: 424  SEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEEL 483
            SEEDF+ RPEFTDPEILRTNLA+VILQM  L LG+I  FPF+E PD + I DG  LL+EL
Sbjct: 420  SEEDFIGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQEL 479

Query: 484  GAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRE 543
             A+     D   +LT  G+QLARLP+DPR+ RM+LEA+KLG L+EV+I+ASA+SIQDPRE
Sbjct: 480  SAV-----DRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRE 534

Query: 544  RPSDKQQSADDKHRRFNHEDSDFLTLVNLWHYIGQQQKALTSNQFRRQCKLDYLNYLRVR 603
            RP ++QQ+AD  H ++   DSDF  LVNLW    +Q++ LT++  R  C+ ++LNYLR+R
Sbjct: 535  RPPERQQAADQAHAQWKDPDSDFAGLVNLWRGFEEQRQELTASPLRNWCRKNFLNYLRLR 594

Query: 604  EWQDVYTQLHQSTREMGFKLNDEPGSYHAVHSAILVGLLSHIGMKDQEKNEYHGARNARF 663
            EW+D + QL    R+M   +N EP  +  +H A+L GLLS IG K ++  +Y GAR  RF
Sbjct: 595  EWRDSHRQLSLICRDMQLTVNKEPADFPKLHKAVLSGLLSQIGQKTED-GDYLGARQRRF 653

Query: 664  NIFPASGLFKKQPKWVMSAELVETSKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHWSKK 723
             I P+SG+ KK+P+W+M+AELVET+KL+AR+VAKI+ DWIEPLA HL K+++ EPHW KK
Sbjct: 654  WIHPSSGIGKKRPQWLMTAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKK 713

Query: 724  NAAVMAYEKVMLYGIPIVPKRLVNYGTIDPVLSREIFIRSALVEGDWETKHAFFKQNRAL 783
               V+A+E++ L+G+ +V +R V+YG IDPV+SRE+FIR  LV G+ +++      N+ L
Sbjct: 714  RGQVVAFEQITLFGLIVVGRRPVHYGPIDPVVSRELFIREGLVRGEIQSRAKCLTANQQL 773

Query: 784  LAEVEELEHKSRRRDILVDDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLSFEK 843
            L +++ELE K+RRRDIL D+E L+ FYD R+  E+     FD+W+K  S+K P LL   +
Sbjct: 774  LEQLDELEAKARRRDILADEETLYAFYDARLPAEIHQTATFDSWYKINSQKDPQLLIMRE 833

Query: 844  EMLFKGDASHITDLDYPNFWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPHGFD 903
            E +   +AS +T   YP+  H G+L+L LSY FEP    DGVT+ +P P+L  + P   +
Sbjct: 834  EDVLAREASEVTAAHYPDTLHLGDLELALSYHFEPNHPRDGVTLRVPAPLLPALPPERLE 893

Query: 904  WQIPGLRHELVVSLIKSLPKTLRKNFVPAPNYADAFLARVTPFEMPLLDAMEKELRRMTG 963
            W +PG+     ++L+++LPK LRKNFVP P++  A L R+   +  L  A+ +EL RMTG
Sbjct: 894  WLVPGVIEAKCIALVRNLPKALRKNFVPVPDFVKAALQRIEFGQGSLPQALGRELLRMTG 953

Query: 964  VTVLREDW--KLDQLPAHLKITYRAVDHRNRKLNESCDLHELKESLKEKVQETLSQVADD 1021
              V  E W     Q+ +HLK+    VD + + L E  DL EL     E  Q  L+ V   
Sbjct: 954  ARVSDEAWAEAAQQVESHLKMNLEVVDGQGKFLGEGRDLAELTARFAEASQAALA-VPQT 1012

Query: 1022 DIEQRDLHTWSFGELPKVYQQKRGGFEVRAYPALVDKKDSVEIKLFETEQEQLSAMRAGQ 1081
               Q+ +    F  + +  QQK  G  +  YPALV++  +V+   F T  E     R   
Sbjct: 1013 AKSQQPVEAKVFAAVAEKTQQKIAGLSMTVYPALVEEGGTVKEGRFSTAAEAEFQHRRAL 1072

Query: 1082 RRLILLNVPSPIKYLHANLPNKSKLGLYFNPYGKVLDLIDDCIACGVDK-LIEERGGMVW 1140
            +RL++  +  P K+L   LP  ++LGL +   G++  L++D +   +D  ++E    +  
Sbjct: 1073 QRLLMQQLAEPAKFLRGKLPGLTELGLMYRELGRIDALVEDILLASLDTCVLEGETNLPR 1132

Query: 1141 EPQAFEALKEHVRAELGDTVVEIAKQVETILTTAYNINKRLKGKVDFTMAFALSDVKAQI 1200
            +     AL E  R    +    +A+    +L   + + KR KGK+D   A AL+D+K Q+
Sbjct: 1133 DGAGLAALAERKRGSWTEHAERLARLTLDVLKLWHGLQKRFKGKIDLAQAVALNDIKQQL 1192

Query: 1201 EGLIFSGFATECGWKRLPDILRYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYKELLN 1260
              L++ GF  E       ++ RY++AIE R+EKLP    KDR+   ++  +   Y+  L 
Sbjct: 1193 SHLVYPGFVRETPAHWFKELPRYLKAIELRLEKLPSQVQKDRVWSGELAGLWTHYENRLK 1252

Query: 1261 KIPKGMAIPDNVREIRWMLEELRVSYFAQQLGTPYPVSDKRI 1302
            K  +       +   RW LEE RVS FAQQLGT  P+SDKR+
Sbjct: 1253 KHAQEGKRDPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRL 1294