Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 1289 a.a., ATP-dependent RNA helicase HrpA from Variovorax sp. OAS795

 Score = 1039 bits (2686), Expect = 0.0
 Identities = 576/1287 (44%), Positives = 797/1287 (61%), Gaps = 75/1287 (5%)

Query: 80   KIEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYG------ 133
            +I++P  LPVS +RD+I  AI  HQVVIV GETGSGKTTQLPKI   LGRGK        
Sbjct: 11   RIDFPESLPVSARRDEIMAAIEAHQVVIVCGETGSGKTTQLPKIALALGRGKLNAPPGKG 70

Query: 134  -LIGHTQPRRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEI 192
             LIGHTQPRR+AA SVA RIAEE++T LG  VG+KVRF D++S    +KLMTDGILLAE 
Sbjct: 71   RLIGHTQPRRIAASSVAKRIAEELKTPLGDVVGFKVRFQDRLSRDASVKLMTDGILLAET 130

Query: 193  QNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFS 252
            Q D  L  YDT+IIDEAHERSLNIDF+LGYL+++LPRRPDLKVI+TSATID +RF++HF+
Sbjct: 131  QTDPLLKAYDTLIIDEAHERSLNIDFLLGYLREILPRRPDLKVIVTSATIDADRFAQHFA 190

Query: 253  N----APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDE--GLGDILI 306
            +    APII VSGRT+PVE RYRP     +   + D  + I   VDEL  +    GDIL+
Sbjct: 191  SRGGPAPIIYVSGRTFPVEQRYRPF----EESREHDLNDAIADGVDELWRDPHNAGDILV 246

Query: 307  FMNGEREIRDTADALSKRN-----LRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATNV 361
            F+ GEREIR+ AD L +       LR+ E++PL+ARLS  EQ++IF  H GRRIVLATNV
Sbjct: 247  FLPGEREIREAADHLRRHLSHQPLLRNAEVLPLFARLSGPEQDRIFDGHTGRRIVLATNV 306

Query: 362  AETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIR 421
            AETSLTVPGI+YVID GTAR+ RYS+R+KV++L +EPISQA+ANQR GRCGR   GICIR
Sbjct: 307  AETSLTVPGIRYVIDTGTARVKRYSFRSKVEQLLVEPISQAAANQRAGRCGRVANGICIR 366

Query: 422  LYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLE 481
            LY E+DF  RP FTDPEILR++LA VIL+M +L LGD+  FPF+EAP  R I DG +LL 
Sbjct: 367  LYDEKDFEGRPRFTDPEILRSSLAGVILRMKSLRLGDVARFPFLEAPSPRAIADGYQLLN 426

Query: 482  ELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDP 541
            ELGA++D        LT +G +LA+LP+DPR+ RM+LEA   G L+EV++IASALS+QD 
Sbjct: 427  ELGAVDDA-----NELTATGAELAKLPLDPRVGRMILEARTRGALEEVLVIASALSVQDV 481

Query: 542  RERPSDKQQSADDKHRRFNHEDSDFLTLVNLWHYIGQQQKA------LTSNQFRRQCKLD 595
            R+RP D QQ AD  H +F+ E S+F   + LW +I   +        L++ Q+ +  + +
Sbjct: 482  RDRPMDAQQQADQAHSKFDDEKSEFSGYLRLWKWIADARGGHGDTHKLSNRQYEQLLRQN 541

Query: 596  YLNYLRVREWQDVYTQLHQSTREMGFKLNDEPGSYHAVHSAILVGLLSHIGMKDQEKNEY 655
            ++N  RVREW+D+++QL     E  +++N EP  Y  +H ++L GLL ++G K ++   Y
Sbjct: 542  FINIRRVREWRDIHSQLLTVVTEHKWRINAEPAGYEPLHLSMLAGLLGNVGWKLEDDEAY 601

Query: 656  HGARNARFNIFPASGLFKKQPKWVMSAELVETSKLWARVVAKIEPDWIEPLAKHLSKRSY 715
             GAR  +F   P + L KK  +W+++AELVET++L+ R +A IEP W+E +A HL K+  
Sbjct: 602  LGARGIKFYKHPGAHLKKKPGRWIVAAELVETTRLFGRGIANIEPQWLEQVAGHLLKKQL 661

Query: 716  SEPHWSKKNAAVMAYEKVMLYGIPIVPKRLVNYGTIDPVLSREIFIRSALVEGDWETKHA 775
             +PHW KK A V A E+  LYG+ +   R V++  +DPV +REIFIR ALV G WE+K  
Sbjct: 662  LDPHWEKKGAQVSALERATLYGLVVYSGRRVDFTKVDPVAAREIFIREALVAGQWESKFP 721

Query: 776  FFKQNRALLAEVEELEHKSRRRDILVDDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKT 835
            F   NR L+ EVE LEHKSRR+D+LVDDE +F FYD ++  +V SG  F+ W++ ASR+ 
Sbjct: 722  FLVANRKLVREVEGLEHKSRRQDVLVDDELIFAFYDAQLPADVASGITFENWYRHASREQ 781

Query: 836  PDLLSFEKEMLFKGDASHITDLDYPNFWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILN 895
            P LL   +E L +  A+ IT   +P+    G +    +Y  EPG+  DG+TV +PL +LN
Sbjct: 782  PRLLFLTREELMRHQAAGITTQSFPSTLRLGGVDCAATYLHEPGDAKDGLTVSVPLFVLN 841

Query: 896  QVEPHGFDWQIPGLRHELVVSLIKSLPKTLRKNFVPAPNYADAFLARVTPFEM----PLL 951
            QV     +W + G+  + + +L+KSLP+  R   VP P+ A      ++  E+     L 
Sbjct: 842  QVSEERCEWLVTGMLKDKIQALLKSLPQRPRSRLVPLPDSAAKLAEELSAPEVFGHGSLT 901

Query: 952  DAMEKELRRMTGVTVLREDWKLDQLPAHLKITYRAVDHRNRKLNESCDLHELKESLKEKV 1011
            D + K +R  T + V R D+KLD LP HL +  R VD   R+L    +L  LK  L  + 
Sbjct: 902  DVLLKRVRDATSIDVKRADFKLDMLPPHLFMNLRIVDEHGRQLGMGRNLGALKAELGAQA 961

Query: 1012 QETLSQVADDDIEQ---------------------------------RDLHTWSFGELPK 1038
            +     +A  +++                                  +   +WSFGELP+
Sbjct: 962  RGAFQALAGLNVKASPDRKPAQAAEGQAPAKGHAAAAAPATPSLPAGQRYTSWSFGELPE 1021

Query: 1039 VYQQKRGGFEVRAYPALVDKKDSVEIKLFETEQEQLSAMRAGQRRLILLNVPSPIKYLHA 1098
            + + +RG   +  +PAL D+ D+V I++F+      S  RAG RRL  L +   +KYL  
Sbjct: 1022 LMEVRRGAQSLIGFPALRDEGDAVTIEVFDEPAVAASKHRAGLRRLFALQLKDALKYLEK 1081

Query: 1099 NLPNKSKLGLYFNPYGKVLDLIDDCIACGVDKLIEERGGMVWEPQAFEALKEHVRAELGD 1158
            N+P+  K+ + + P G   +L    I   +D+   +   +  +  AF+   E  R  L  
Sbjct: 1082 NIPDLQKMAVAYMPLGTSEELRTQIIDVAIDRAFLQE-PLPADEFAFKRRLEEGRGRLTL 1140

Query: 1159 TVVEIAKQVETILTTAYNINKRLKGKVDFTMAFALSDVKAQIEGLIFSGFATECGWKRLP 1218
               E+A+   +IL       +++K         A+ D   Q++ L+   F  +  W +L 
Sbjct: 1141 IANEVARLASSILVEYAAAARKIKDTK--IQPEAVQDAAQQLQRLVGKRFIADTPWTQLQ 1198

Query: 1219 DILRYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYKELLNKIPKGMAIPDNVREIRWM 1278
               RY++AI  R++KL  DP +D   + ++     +Y  L+ +  KG A+ + + E RW+
Sbjct: 1199 HFARYLKAIVLRLDKLRADPARDAAKLAELRPQEQRYWRLVAE-RKG-AVDERMLEFRWL 1256

Query: 1279 LEELRVSYFAQQLGTPYPVSDKRIINA 1305
            LEELRVS+FAQ+L TP PVS KR+  A
Sbjct: 1257 LEELRVSFFAQELRTPQPVSIKRLDKA 1283