Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 816 a.a., ATP-dependent helicase HrpB from Sphingobium sp. HT1-2

 Score =  239 bits (611), Expect = 6e-67
 Identities = 156/453 (34%), Positives = 237/453 (52%), Gaps = 17/453 (3%)

Query: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146
           LP+     D+  A+A     ++    G+GKTT +     +    + G +    PRRLAAR
Sbjct: 6   LPIHAVLPDLLAALARGSNAVLVAPPGAGKTTAVAPALLDQPWCE-GQVLLLSPRRLAAR 64

Query: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTIII 206
           + A RIAE +  + GG VGY  R   ++S +T++ ++T+GI +  IQ+D  L     ++ 
Sbjct: 65  AAAERIAEMLGEQPGGTVGYATRMDSKVSAKTRLLVLTEGIFVRRIQDDPELAGVSAVLF 124

Query: 207 DEAHERSLNIDFILGY-LKQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEVSGRTYP 265
           DE HERSL+ DF L   L      RPDL+++  SAT+D  RFS     AP+IE  G+  P
Sbjct: 125 DEVHERSLDSDFGLALALDAQAALRPDLRILPMSATLDGARFSTLLDGAPVIESEGKIQP 184

Query: 266 VEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADALSKRN 325
           +E+R+  +    +   + +    I +A++E   E  GD+L F+ G REI  TA+ +    
Sbjct: 185 LELRH--IGRHAEKRIEDEMAAAIRRALEE---ETQGDLLAFLPGVREIERTAERIEGGA 239

Query: 326 LRDTEIVPLYARLSAGEQNKIFQP--HAGRRIVLATNVAETSLTVPGIKYVIDPGTARIS 383
               E+  L+  L    Q    +P     R+++LAT++AETSLT+ G++ V+D G AR  
Sbjct: 240 F---EVHMLHGSLDPAAQRAAIRPSREGRRKVILATSIAETSLTIDGVRIVVDSGLARRP 296

Query: 384 RYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEILRTN 443
           RY     V RL  E  SQASA QR GR  R   G+  RL+        P F  PEIL ++
Sbjct: 297 RYDRAAGVTRLVTERASQASATQRAGRAARQRPGVAYRLWEAAATAGMPPFDPPEILESD 356

Query: 444 LASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTESGKQ 503
           L+S++L     G+ D  +  +++AP    + +  + L  L A+     D   R+T  GK 
Sbjct: 357 LSSLLLDCALWGVSDPASLRWLDAPPAAAVAEAAKRLTALEAL-----DADGRITAHGKA 411

Query: 504 LARLPIDPRLARMVLEASKLGCLKEVMIIASAL 536
           LA LP+ PR+A M++ A + G  +    IA  L
Sbjct: 412 LATLPLAPRIAHMLVRAGERGLARTAAEIAVLL 444