Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 1301 a.a., ATP-dependent helicase HrpA from Pseudomonas putida KT2440

 Score = 1219 bits (3153), Expect = 0.0
 Identities = 651/1295 (50%), Positives = 860/1295 (66%), Gaps = 25/1295 (1%)

Query: 22   LKKALGECLIKDRFRFSKRIDGASKIKNESARNAVFDEIALDIAQSMMVVEQRKQQMPKI 81
            L + L   +I DR    +++    K  +E+      +++    AQ    V  R+Q +P +
Sbjct: 9    LLQNLDHAMIADRHCLRRQLHELRKRPDEAKLAQWVEKVQASCAQ----VTARQQSVPTV 64

Query: 82   EYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPR 141
             Y   LP++ KRD+I +A+A +QV+++AGETGSGKTTQLPKIC ELGRG +GLI HTQPR
Sbjct: 65   RYDDNLPIAAKRDEIKKALAENQVLVIAGETGSGKTTQLPKICLELGRGSHGLIAHTQPR 124

Query: 142  RLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQY 201
            R+AARSVA R+AEE+ T LG  VGY+VRF DQ    T +KLMTDGILLAE Q+DRFL +Y
Sbjct: 125  RIAARSVAARVAEELGTPLGALVGYQVRFEDQSDSNTLVKLMTDGILLAETQHDRFLERY 184

Query: 202  DTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEVSG 261
            DTII+DEAHERSLNIDF+LGYLK LL RRPDLK+IITSATID ERFS+HF  APIIEVSG
Sbjct: 185  DTIIVDEAHERSLNIDFLLGYLKTLLHRRPDLKLIITSATIDLERFSRHFDGAPIIEVSG 244

Query: 262  RTYPVEVRYRPLAGDDDSESDR--DQL---EGIFQAVDELCD------EGLGDILIFMNG 310
            RT+PV+  YRPL  + D E ++  D L   + I   +DEL        +G GD+LIF+ G
Sbjct: 245  RTFPVDTWYRPLTSEQDEEGNQIEDDLTVDQAILATLDELAQHERSEGKGPGDVLIFLPG 304

Query: 311  EREIRDTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATNVAETSLTVPG 370
            EREIRD A+ L K  LR TEI+PLYARLS  EQ +IFQPH GRR+VLATNVAETSLTVPG
Sbjct: 305  EREIRDAAEILRKAQLRHTEILPLYARLSPAEQQRIFQPHTGRRVVLATNVAETSLTVPG 364

Query: 371  IKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLS 430
            I+YVID GTARISRYSYR KVQRLPIE +SQASANQRKGRCGR E GIC+RLYSEEDF S
Sbjct: 365  IRYVIDTGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYSEEDFNS 424

Query: 431  RPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQI 490
            RP FTDPEILRTNLA+VILQM  L LG I+AFPF+E PD + I DG  LL+EL A+N + 
Sbjct: 425  RPAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELSAVNRE- 483

Query: 491  KDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSDKQQ 550
                 +LT  G+QLARLPIDPRL RM+LE ++LG L+EV+I+ SALS+QDPRERP ++QQ
Sbjct: 484  ----NQLTPIGRQLARLPIDPRLGRMLLEGARLGSLQEVLIVTSALSVQDPRERPPERQQ 539

Query: 551  SADDKHRRFNHEDSDFLTLVNLWHYIGQQQKALTSNQFRRQCKLDYLNYLRVREWQDVYT 610
            +AD  H ++   DSDF  LVNLW    +Q++ALT+N  R  C+  +LNYLR+REW+D + 
Sbjct: 540  AADQAHAQWKDVDSDFAALVNLWRGFEEQRQALTANPLRNWCRKQFLNYLRLREWRDAHR 599

Query: 611  QLHQSTREMGFKLNDEPGSYHAVHSAILVGLLSHIGMKDQEKNEYHGARNARFNIFPASG 670
            QL    R++   +N EP  Y  +H AIL GLLS IG K +E  +Y GAR  RF + P+SG
Sbjct: 600  QLALICRDLQLTVNKEPTDYQKLHKAILSGLLSQIGQKTEE-GDYQGARQRRFWVHPSSG 658

Query: 671  LFKKQPKWVMSAELVETSKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHWSKKNAAVMAY 730
            L +K+P+WVM+AELVET+KL+AR+VAKIEPDWIEPLA HL K+++ EPHW KK   V+AY
Sbjct: 659  LGRKRPQWVMAAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAY 718

Query: 731  EKVMLYGIPIVPKRLVNYGTIDPVLSREIFIRSALVEGDWETKHAFFKQNRALLAEVEEL 790
            E++ LYG+ +V +R V+YG IDP  SRE+FIR  LV G+ +++      N+ LL E++EL
Sbjct: 719  EQITLYGLILVGRRPVHYGPIDPATSRELFIREGLVGGEIQSRAKCLAANKRLLGELDEL 778

Query: 791  EHKSRRRDILVDDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLSFEKEMLFKGD 850
            E K+RRRDIL D+E L+ FY+ R+  E+     FD+W++  S+K  +LL   +E +   +
Sbjct: 779  EAKARRRDILADEETLYAFYEARLPAEIHQTATFDSWYRMGSQKDANLLIMREEDVLARE 838

Query: 851  ASHITDLDYPNFWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPHGFDWQIPGLR 910
            AS +T   YP+    G+L+L LSY FEPG   DGVTV +P P+L  +     +W +PGL 
Sbjct: 839  ASEVTAAQYPDSMQVGDLRLPLSYHFEPGHPRDGVTVRVPAPLLPSLPGERLEWLVPGLL 898

Query: 911  HELVVSLIKSLPKTLRKNFVPAPNYADAFLARVTPFEMPLLDAMEKELRRMTGVTVLRED 970
                V+L+++LPK LRKNFVP P++  A LAR+T  +  L  A+ +EL RMTG  V  E 
Sbjct: 899  EAKCVALVRNLPKALRKNFVPVPDFVKASLARMTFGQGALPQALGQELLRMTGARVSDEA 958

Query: 971  W--KLDQLPAHLKITYRAVDHRNRKLNESCDLHELKESLKEKVQETLSQVADDDIEQRDL 1028
            W   ++Q+  HL++    VD + + L E  DL EL        Q  L+   D   EQ  +
Sbjct: 959  WDESVNQVEGHLRMNIEVVDGQGKFLGEGRDLAELTARFAAASQAALAVPRDAKGEQ-PV 1017

Query: 1029 HTWSFGELPKVYQQKRGGFEVRAYPALVDKKDSVEIKLFETEQEQLSAMRAGQRRLILLN 1088
               +F E+ +  QQK  G  +  YPALV+   +V    F T+ E     R   +RL+L  
Sbjct: 1018 QAKAFSEVKQTAQQKIAGLSMTVYPALVEDNGTVREGRFSTQAEAEFQHRRALQRLLLQQ 1077

Query: 1089 VPSPIKYLHANLPNKSKLGLYFNPYGKVLDLIDDCIACGVDK-LIEERGGMVWEPQAFEA 1147
            +  P K+L   LP  ++LGL +   G+V  L++D +   +D  ++E    +  E  A  A
Sbjct: 1078 LAEPAKFLRGKLPGLTELGLLYREMGRVEALVEDILLASLDSCILEGEQPLPREGAALAA 1137

Query: 1148 LKEHVRAELGDTVVEIAKQVETILTTAYNINKRLKGKVDFTMAFALSDVKAQIEGLIFSG 1207
            L E  R    +    +A+Q   +L   + + KR KGK+D + A AL+D+K Q+  L++ G
Sbjct: 1138 LAERKRGSWAEHAERLARQTLEVLKLWHGLQKRFKGKIDLSQAVALNDIKQQLGNLVYPG 1197

Query: 1208 FATECGWKRLPDILRYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYKELLNKIPKGMA 1267
            F  E       ++ RY++A+E R+EKL     KDR+   ++ ++  +YK   +K  +   
Sbjct: 1198 FVRETPGVWFKELPRYLKAVELRLEKLGSQVQKDRVWSGELANLWAQYKARADKHAQEGK 1257

Query: 1268 IPDNVREIRWMLEELRVSYFAQQLGTPYPVSDKRI 1302
              + +   RW LEE RVS FAQQLGT  P+SDKR+
Sbjct: 1258 RDEQLTVYRWWLEEYRVSLFAQQLGTKVPISDKRL 1292