Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 848 a.a., ATP-dependent helicase HrpB from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  225 bits (574), Expect = 1e-62
 Identities = 153/460 (33%), Positives = 235/460 (51%), Gaps = 12/460 (2%)

Query: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146
           LPV +    + Q +      ++    G+GKTT +P    E      G I   +PRRLA R
Sbjct: 13  LPVKEALPRLLQVLNTSNRAVLEAPPGAGKTTLVPLALLEADWRGDGKILVLEPRRLATR 72

Query: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTIII 206
           + A R+A+ +   +G  VGY VR   ++S +T+++++T+GIL   IQ+D  L     II 
Sbjct: 73  AAAERMADLLGEPVGQTVGYWVRMDHKVSRKTRVEVVTEGILTRIIQDDPALEGVAAIIF 132

Query: 207 DEAHERSLNIDFILGY-LKQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEVSGRTYP 265
           DE HER+L  D  L   L      RPDL++++ SAT+D     + +  AP+++  GR +P
Sbjct: 133 DEFHERNLQADLGLALALDAQAVLRPDLRLLVMSATLDATAIGQ-WLQAPVVQSEGRLFP 191

Query: 266 VEVRY---RPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADALS 322
           V+  +     +A   +  S R            L  E  GD+L+F+ G  EI+  A  L 
Sbjct: 192 VQTHFLSPAEVAAAGNYPSQRLATLTPKAIRQALSQEAEGDLLVFLPGMGEIKKVAQQLE 251

Query: 323 KRNLRDTEIVPLYARLSAGEQNKIFQPH--AGRRIVLATNVAETSLTVPGIKYVIDPGTA 380
                  E+  L+  L   +Q    QP     R++VLAT++AETSLT+ G+  V+D G A
Sbjct: 252 NTLGPAIELHLLHGDLPLSKQVAAIQPSPKGKRKVVLATSIAETSLTIEGVTIVVDGGFA 311

Query: 381 RISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEIL 440
           R+ R++ RT +  L   P+SQA A+QR+GR GR   G+C RL+S  D +  P    PEIL
Sbjct: 312 RVPRFTPRTGLTTLATVPVSQAGADQRRGRAGRLGPGVCYRLWSTADQMQLPPRQSPEIL 371

Query: 441 RTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTES 500
             +L  ++L++   G+ D     ++++P    +     LL+ L A+     D     T  
Sbjct: 372 DADLTGLVLELALWGVKDATTLNWLDSPPAAALALAKDLLQRLEAL-----DAAGNPTPH 426

Query: 501 GKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQD 540
           GK LA L I PRL  +V+   +LG       +A+ LS +D
Sbjct: 427 GKALASLGIHPRLGHLVMRGHELGFGATACALAALLSERD 466