Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 815 a.a., ATP-dependent helicase HrpB from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  252 bits (643), Expect = 1e-70
 Identities = 160/470 (34%), Positives = 257/470 (54%), Gaps = 17/470 (3%)

Query: 78  MPKIEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGH 137
           MP   +   LPV +    + + +A    +IV    G+GK+T LP    +        I  
Sbjct: 1   MPFNPFTIDLPVREIIPAVREHLAAQNTLIVNAPPGAGKSTLLPLAILDEVWLTGQKIVM 60

Query: 138 TQPRRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRF 197
            +PRRLAA+++A R+A+ +  E+G  VGY++RF  +IS++T+I+++T+GIL   I +DR 
Sbjct: 61  LEPRRLAAKTIAERLAQLLGEEVGQSVGYRIRFETRISERTRIEVVTEGILTRMIHSDRA 120

Query: 198 LNQYDTIIIDEAHERSLNIDFILGYLKQLLPR-RPDLKVIITSATIDPERFSKHFSNAPI 256
           L     +I DE HERS++ D  +   ++     RPDL++++ SAT+D  + +     AP+
Sbjct: 121 LTGIGIVIFDEFHERSIHADVAMALSREAQHTLRPDLRIMVMSATLDMPQLTS-LLKAPV 179

Query: 257 IEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRD 316
            +  GR YP+E  Y    GD D   DR   E   + + +   E  GDIL+F+ GE +IR 
Sbjct: 180 AQSMGRQYPIETHY---TGDAD---DRMLPEMTAKVIKQAAQEQEGDILVFLPGEGDIRK 233

Query: 317 TADALSKRNLRDTEIVPLYARLSAGEQNKIFQP--HAGRRIVLATNVAETSLTVPGIKYV 374
             + + +R LR+ +I PL+  L  G+Q     P     R++VLAT++AETSLT+ GI  V
Sbjct: 234 V-ETILRRELRNFQIHPLFGMLPFGKQYAAIMPDRQGRRKVVLATSIAETSLTIEGISVV 292

Query: 375 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEF 434
           +D G  + SR+  ++ + RL    IS+ +A+QR GR GR   G   R++S+         
Sbjct: 293 VDTGFGKTSRFDPKSGLSRLETVRISKDAADQRAGRAGRLGPGTAYRMWSKTTHERMAPH 352

Query: 435 TDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPK 494
             PEI+  +L+S++L M   G+ DI    ++  P +  +Q    +L +L A+        
Sbjct: 353 RTPEIMEADLSSLVLDMAQWGITDIRGLTWLNPPPRAALQYATDMLHQLQALE------H 406

Query: 495 KRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRER 544
            R+TE GK++  LP  PR+A M+L+A +   +     IAS L  +DP +R
Sbjct: 407 GRITEHGKRMHALPCHPRIAHMLLKAEETDQVALASDIASVLEERDPLDR 456