Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 1292 a.a., macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  992 bits (2564), Expect = 0.0
 Identities = 567/1294 (43%), Positives = 790/1294 (61%), Gaps = 84/1294 (6%)

Query: 81   IEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYG------- 133
            IE+P  LPVS +R +I  A+  HQVVIV GETGSGKTTQLPKI   +GRGK         
Sbjct: 8    IEFPESLPVSARRHEIEAAMRDHQVVIVCGETGSGKTTQLPKIALAMGRGKCNAKPGQRG 67

Query: 134  -LIGHTQPRRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEI 192
             LIGHTQPRR+AA SVA RIAEE++T LG  VGYKVRF D++S    +KLMTDGILLAE 
Sbjct: 68   QLIGHTQPRRIAASSVAKRIAEELKTPLGEVVGYKVRFQDRLSKDASVKLMTDGILLAET 127

Query: 193  QNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFS 252
            Q D  L  YDTIIIDEAHERSLNIDF+LGYL+QLLPRRPDLKV++TSATID +RF+++F+
Sbjct: 128  QTDPDLRAYDTIIIDEAHERSLNIDFLLGYLRQLLPRRPDLKVVVTSATIDADRFARYFA 187

Query: 253  NA----PIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELC-DEGLGDILIF 307
            +A    P++ VSGRT+PVEVR+RP     +   D D    I  AVDEL      GDIL+F
Sbjct: 188  SAKGPAPVLMVSGRTFPVEVRWRPY----EESRDYDLNNAIADAVDELWRGPAGGDILVF 243

Query: 308  MNGEREIRDTADALSKRN-----LRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATNVA 362
            + GEREIR+ AD L K       LR  E++PL+ARLS  EQ++IFQ H+GRRIVL+TNVA
Sbjct: 244  LPGEREIREAADHLRKHLSHQPVLRSAEVLPLFARLSQAEQDRIFQDHSGRRIVLSTNVA 303

Query: 363  ETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRL 422
            ETSLTVPGI++VID GTAR+ RYS+R KV++L +EPISQA+ANQR GRCGR  +GI IRL
Sbjct: 304  ETSLTVPGIRFVIDAGTARVKRYSFRQKVEQLLVEPISQAAANQRAGRCGRVADGIAIRL 363

Query: 423  YSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEE 482
            Y E  F +RP FTDPEILR++LA VIL+M AL LG +E F F+EAP KR I DG +LL E
Sbjct: 364  YEEAGFGARPAFTDPEILRSSLAGVILRMKALRLGAVEDFAFIEAPQKRAIVDGYQLLAE 423

Query: 483  LGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPR 542
            L A+     D    LT  G+ L+RLP+DPR+ RM+LEA + G L EV++IASALS+QD R
Sbjct: 424  LNAV-----DEANELTPIGQTLSRLPLDPRVGRMILEAQQRGALDEVLVIASALSVQDVR 478

Query: 543  ERPSDKQQSADDKHRRFNHEDSDFLTLVNLWHYI-------GQQQKALTSNQFRRQCKLD 595
            +RP DKQ  AD    +F+ E S+F   + LW ++       G+  K L+  Q+    + +
Sbjct: 479  DRPLDKQAQADQAQAKFDDEKSEFSGTLKLWKWLEDTKGGHGKDHK-LSHRQYESVLREN 537

Query: 596  YLNYLRVREWQDVYTQLHQSTREMGFKLNDEPGSYHAVHSAILVGLLSHIGMKDQEKNEY 655
            ++N  RVREW+D+++QLH    E  ++LND+P SY  +H A+L GLL ++G K + ++ Y
Sbjct: 538  FINVRRVREWRDIHSQLHTVVAEHQWRLNDKPASYEQLHLAMLAGLLGNVGQKHETEDLY 597

Query: 656  HGARNARFNIFPASGLFKKQPKWVMSAELVETSKLWARVVAKIEPDWIEPLAKHLSKRSY 715
             GAR  +F   P + L K+  +W++ AELVET++L+ R +A IEP W+E +  HL K+  
Sbjct: 598  LGARGIKFYRHPGANLSKRPGRWIVCAELVETTRLFGRGIAGIEPLWLEQVGGHLIKKQL 657

Query: 716  SEPHWSKKNAAVMAYEKVMLYGIPIVPKRLVNYGTIDPVLSREIFIRSALVEGDWETKHA 775
             +PHW KK A V A E+  LYG+ +   R  +YG +DPV +REIFIR ALV G+WET+  
Sbjct: 658  LDPHWEKKAAQVTALERATLYGLVVYSNRRTDYGRVDPVGAREIFIREALVAGEWETRLP 717

Query: 776  FFKQNRALLAEVEELEHKSRRRDILVDDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKT 835
            F   N+ L+ +V ELEHKSRR+D+LVDDE ++ FYDQ++   + +G   + W++ A R+ 
Sbjct: 718  FLAANQKLVRQVAELEHKSRRQDVLVDDELIYAFYDQQLPANICNGAAMERWYRDAVREN 777

Query: 836  PDLLSFEKEMLFKGDASHITDLDYPNFWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILN 895
            P LL   +E L + +A+ IT   +P     G +    SY  EPG+  DG++V +P+  LN
Sbjct: 778  PKLLLLTREELMRHEAAGITTQTFPKALRLGGVDCACSYLHEPGDPRDGLSVTLPIFALN 837

Query: 896  QVEPHGFDWQIPGLRHELVVSLIKSLPKTLRKNFVPAPNYADAF---LARVTPFEM-PLL 951
            Q      DW +PG+  E +++L+K+L +  R   VP P  A+ F   L     F    L+
Sbjct: 838  QASEDRCDWLVPGMLKEKLLALLKTLHQRPRSRLVPLPATAERFAQALCEPAAFGAGNLM 897

Query: 952  DAMEKELRRMTGVTVLREDWKLDQLPAHLKITYRAVDHRNRKLNESCDLHELKESLKEKV 1011
            DA+ K +R  T + + R D K+D L AH  +  R VD   R+L +  +L  LK  L  + 
Sbjct: 898  DAVLKLVREATQLDIQRNDIKVDMLSAHHFMHLRVVDEHGRQLGQGRNLAALKAELGAQA 957

Query: 1012 QETLSQVADDDIE--------------------------------QRDLHT-WSFGELPK 1038
            +     +A   +E                                    HT W FGELP+
Sbjct: 958  RGAFQALASLKMEGLRAAAPPAAPAKGSAAPVAVKAAAAKAPAVSAAQRHTAWDFGELPE 1017

Query: 1039 VYQQKRGGFEVRAYPALVDKKDSVEIKLFETEQEQLSAMRAGQRRLILLNVPSPIKYLHA 1098
            + + ++G   +  +PALVD  ++V I++F+  +   +  R G RRL  L +   +KYL  
Sbjct: 1018 LMEIRQGQQTLIGFPALVDDGEAVRIEVFDEPEVAQARHREGLRRLFALQIRDALKYLEK 1077

Query: 1099 NLPNKSKLGLYFNPYGK-------VLDLIDDCIACGVDKLIEERGGMVWEPQAFEALKEH 1151
            NLP    +G+ +   GK       + +L    +   +D+       +  +  AF+   E 
Sbjct: 1078 NLPGLQAMGVAYMQVGKEAGGGGTLEELRSQILELALDRAF-LGDPLPGDEAAFKRRVEE 1136

Query: 1152 VRAELGDTVVEIAKQVETILTTAYNINKRLKGKVDFTMAFALSDVKAQIEGLIFSGFATE 1211
             R  L     EIA+   T+L       ++LK       A   +D+  Q++ L+   F  +
Sbjct: 1137 GRGRLTLIANEIARTAGTVLAEYAAAARKLKDSK--PPADVATDIAQQLQRLVPKRFLLQ 1194

Query: 1212 CGWKRLPDILRYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYKELLNKIPKGMAIPDN 1271
              + +L  + RY++A++ R++KL  DP +D   + ++     ++  L+ +  KG+     
Sbjct: 1195 TPYAQLQHLPRYLKAVQLRLDKLRADPARDATRLAELRPQDQRFWRLVAE-RKGVQ-DAR 1252

Query: 1272 VREIRWMLEELRVSYFAQQLGTPYPVSDKRIINA 1305
            ++E+RW+LEELRVS+FAQ+L TP PVS KR+  A
Sbjct: 1253 LQELRWLLEELRVSFFAQELRTPQPVSLKRLEKA 1286