Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 831 a.a., ATP-dependent helicase HrpB from Magnetospirillum magneticum AMB-1

 Score =  249 bits (637), Expect = 6e-70
 Identities = 158/443 (35%), Positives = 243/443 (54%), Gaps = 19/443 (4%)

Query: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146
           LP+     +I   +     +++    G+GKTT++P    +        I   +PRRLAAR
Sbjct: 4   LPIESVIPEIRAGLRQSHGLVLQAPPGAGKTTRVPLALLDEPWLAGQRILMLEPRRLAAR 63

Query: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTIII 206
           + A R+A  +  + G  VG+++RF  ++  +T+I+++T+GIL   IQ+D  L+    +I 
Sbjct: 64  AAATRMASTLGEQPGETVGWRIRFDSRVGPKTRIEVVTEGILNRMIQDDPSLDGVGLVIF 123

Query: 207 DEAHERSLNIDFILGY-LKQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEVSGRTYP 265
           DE HERSL  D  L   L+     R DLK+++ SAT+D E  ++    AP++   GR +P
Sbjct: 124 DEFHERSLFADLGLALVLESRQGLRDDLKLVVMSATLDGEPVARLMGGAPVVTSQGRAHP 183

Query: 266 VEVRY--RPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADALSK 323
           VE R+  RP          R  ++G+  AV    DE  GDIL+F+ G  EIR     L+ 
Sbjct: 184 VETRFLARP--------EPRAFVDGVAAAVIRALDEEEGDILVFLPGSGEIRRVESLLAD 235

Query: 324 RNL-RDTEIVPLYARLSAGEQNKIFQPH--AGRRIVLATNVAETSLTVPGIKYVIDPGTA 380
               R   I PLY  LS   Q+   +P    GR++VLAT +AETSLT+ G++ V+D G  
Sbjct: 236 HPAARGVLIAPLYGDLSQDAQDGAIRPRRDGGRKVVLATAIAETSLTIEGVRVVVDGGRM 295

Query: 381 RISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEIL 440
           R++R+   + + RL   P+S+A A+QR+GR GR   G+C RL+SE D  +   FT PE+ 
Sbjct: 296 RLARFDPGSGMTRLVTLPVSRAGADQRRGRAGRLGPGVCYRLWSEADDRALLPFTAPEVT 355

Query: 441 RTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTES 500
             +LA + L +   G+ +     +++ P   ++     LL ELGA++D +     R+T  
Sbjct: 356 EADLAPLALDLAQWGVTEALDLSWLDPPPAAHLAQARELLTELGALDDGL-----RITAH 410

Query: 501 GKQLARLPIDPRLARMVLEASKL 523
           GK +ARL + PRLA MVL+   L
Sbjct: 411 GKAMARLGLHPRLAHMVLKGRDL 433