Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 824 a.a., ATP-dependent helicase HrpB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  255 bits (651), Expect = 1e-71
 Identities = 167/472 (35%), Positives = 260/472 (55%), Gaps = 22/472 (4%)

Query: 75  KQQMPKIEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELG--RGKY 132
           K+  P   +   LPV+    ++  A+     V+++  TG+GK+T LP    + G   GK 
Sbjct: 7   KKVNPVEPFVTSLPVAAVLPELLTALKIAPQVLLSAPTGAGKSTWLPLQLLQQGPVAGKI 66

Query: 133 GLIGHTQPRRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEI 192
            L+   +PRRLAAR+VA R+AE +  + G  VGY++R    +  +T+++++T+G+L   I
Sbjct: 67  LLL---EPRRLAARNVAQRLAEALNEKPGETVGYRMRAQSCVGPRTRLEVVTEGVLTRMI 123

Query: 193 QNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPR-RPDLKVIITSATIDPERFSKHF 251
           Q D  L     +I+DE HERSL  D  L  L  +    R DL+++I SAT+D +R  +  
Sbjct: 124 QRDPELRGVGLVILDEFHERSLQADLALALLLDIQQGLRDDLRLLIMSATLDNDRLCQRL 183

Query: 252 SNAPIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGE 311
            +AP I   GR +PVE RY+PLA     +      E +  A  EL     G +L+F+ G 
Sbjct: 184 PDAPTIVSEGRAFPVERRYQPLAAHLRFD------EAVAMATAELLRNENGSLLLFLPGV 237

Query: 312 REIRDTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPHAG--RRIVLATNVAETSLTVP 369
            EI+   + L+ R   D  + PLY  LS   Q K   P     R++VLATN+AETSLT+ 
Sbjct: 238 GEIQRVHEHLASRVGSDVLLCPLYGALSLEAQRKAIVPAPAGMRKVVLATNIAETSLTIE 297

Query: 370 GIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFL 429
           GI+ V+D    R++R+  RT + RL  + ISQAS  QR GR GR   GIC+ L ++E   
Sbjct: 298 GIRLVVDSAQERVARFDARTGLTRLVTQRISQASMTQRAGRAGRLAPGICLHLLAKEQAE 357

Query: 430 SRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQ 489
                +DPEIL ++L+ +++++   G  D  +  +++ P + N+Q   RLL  LGA+  +
Sbjct: 358 RAAAQSDPEILHSDLSGLLMEVLQWGCHDPASLFWLDRPPEVNLQAARRLLLMLGALEGE 417

Query: 490 IKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDP 541
                 RL+  G+++A +  DPRLA M++ A +        ++A+ L  +DP
Sbjct: 418 ------RLSARGRKMAAMGNDPRLAAMLVNAGEGDSAATAAMLAAIL--EDP 461