Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 1300 a.a., ATP-dependent RNA helicase HrpA (EC 3.6.4.13) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1882 bits (4876), Expect = 0.0
 Identities = 921/1286 (71%), Positives = 1078/1286 (83%), Gaps = 1/1286 (0%)

Query: 22   LKKALGECLIKDRFRFSKRIDGASKIKNESARNAVFDEIALDIAQSMMVVEQRKQQMPKI 81
            L++ L   +++D+ RF++R+ G  K+KN  A+ A+F  +A +I Q+   V  R+   P I
Sbjct: 12   LQQRLDALMLRDKQRFARRLHGVKKVKNPDAQQAIFQTMAKEIEQAAAQVALREAARPSI 71

Query: 82   EYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPR 141
             YP  LPVSQK+ DI +AI  HQVVIVAGETGSGKTTQLPKIC ELGRG  GLIGHTQPR
Sbjct: 72   TYPQNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPR 131

Query: 142  RLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQY 201
            RLAAR+VANRIAEE++TE GG +GYKVRF+D +S  T +KLMTDGILLAEIQ DR L QY
Sbjct: 132  RLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILLAEIQQDRLLMQY 191

Query: 202  DTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEVSG 261
            DT+IIDEAHERSLNIDF+LGYLK+LLPRRPDLKVIITSATIDPERFS+HF+NAPIIEVSG
Sbjct: 192  DTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSRHFNNAPIIEVSG 251

Query: 262  RTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADAL 321
            RTYPVEVRYRP+  + D +++RDQL+ IF AVDEL  E  GDILIFM+GEREIRDTADAL
Sbjct: 252  RTYPVEVRYRPIVEEAD-DTERDQLQAIFDAVDELGRESPGDILIFMSGEREIRDTADAL 310

Query: 322  SKRNLRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATNVAETSLTVPGIKYVIDPGTAR 381
            +K NLR TE++PLYARLS  EQN++FQ H+GRRIVLATNVAETSLTVPGIKYVIDPGTAR
Sbjct: 311  NKLNLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTAR 370

Query: 382  ISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEILR 441
            ISRYSYRTKVQRLPIEPISQASANQRKGRCGR  EGICIRLYSE+DFLSRPEFTDPEILR
Sbjct: 371  ISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILR 430

Query: 442  TNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTESG 501
            TNLASVILQMTALGLGDI AFPFVEAPDKRNIQDGVRLLEELGAI    +    +LT  G
Sbjct: 431  TNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITADEQQTAYKLTPLG 490

Query: 502  KQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSDKQQSADDKHRRFNH 561
            +QL++LP+DPRLARMVLEA K GC++E MII SALSIQDPRERP DKQQ++D+KHRRF+ 
Sbjct: 491  RQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPVDKQQASDEKHRRFHD 550

Query: 562  EDSDFLTLVNLWHYIGQQQKALTSNQFRRQCKLDYLNYLRVREWQDVYTQLHQSTREMGF 621
            ++SDFL  VNLW+Y+G+QQKAL+SNQFRR C+ DYLNYLRVREWQD+YTQL Q  +E+G 
Sbjct: 551  KESDFLAFVNLWNYLGEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGI 610

Query: 622  KLNDEPGSYHAVHSAILVGLLSHIGMKDQEKNEYHGARNARFNIFPASGLFKKQPKWVMS 681
             +N EP  Y  +H A+L GLLSHIGMKD +K EY GARNARF+IFP SGLFKK PKW M 
Sbjct: 611  PVNSEPAEYREIHVALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWTMV 670

Query: 682  AELVETSKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHWSKKNAAVMAYEKVMLYGIPIV 741
            AELVETS+LW R+ A+IEP+W+EP+A+HL KRSYSEPHW +   AVMA EKV +YG+PIV
Sbjct: 671  AELVETSRLWGRIAARIEPEWVEPVAQHLIKRSYSEPHWERAQGAVMATEKVTVYGLPIV 730

Query: 742  PKRLVNYGTIDPVLSREIFIRSALVEGDWETKHAFFKQNRALLAEVEELEHKSRRRDILV 801
              R VNY  IDP L RE+FIR ALVEGDW+T+HAFF++N  L AEVEELEHKSRRRDILV
Sbjct: 731  AARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILV 790

Query: 802  DDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLSFEKEMLFKGDASHITDLDYPN 861
            DD+ LF+FYDQR+  +V+S RHFD+WWK  SR+TPDLL+FEK ML K  A  I+ LDYPN
Sbjct: 791  DDDTLFEFYDQRISHDVISARHFDSWWKKISRETPDLLNFEKSMLIKEGAEKISKLDYPN 850

Query: 862  FWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPHGFDWQIPGLRHELVVSLIKSL 921
            FWHQGNLKL+LSYQFEPG ++DGVTVHIPLP+LNQV+  GF+WQIPGLR ELV++LIKSL
Sbjct: 851  FWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVDESGFEWQIPGLRRELVIALIKSL 910

Query: 922  PKTLRKNFVPAPNYADAFLARVTPFEMPLLDAMEKELRRMTGVTVLREDWKLDQLPAHLK 981
            PK +R+NFVPAPNYA+AFL RVTP E+PLLDA+E+ELRRMTGVTV REDW  DQ+P HLK
Sbjct: 911  PKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTGVTVDREDWHWDQVPEHLK 970

Query: 982  ITYRAVDHRNRKLNESCDLHELKESLKEKVQETLSQVADDDIEQRDLHTWSFGELPKVYQ 1041
            IT+R V+ +N+KL E   L ELK +LK KVQETLS VADD IEQ  LH WSFGELP+ Y+
Sbjct: 971  ITFRVVNDKNKKLQEGRSLAELKNALKGKVQETLSAVADDGIEQSGLHIWSFGELPESYE 1030

Query: 1042 QKRGGFEVRAYPALVDKKDSVEIKLFETEQEQLSAMRAGQRRLILLNVPSPIKYLHANLP 1101
            QKRG ++V+A+PALVD++DSV IKLF+   EQ  AM  G RRL+LLN+PSPIKYLH  LP
Sbjct: 1031 QKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWCGLRRLLLLNIPSPIKYLHEKLP 1090

Query: 1102 NKSKLGLYFNPYGKVLDLIDDCIACGVDKLIEERGGMVWEPQAFEALKEHVRAELGDTVV 1161
            NK+KLGLYFNPYGKVL+LIDDCIACGVDKLI+  GG VW    F AL E VRAEL DTVV
Sbjct: 1091 NKAKLGLYFNPYGKVLELIDDCIACGVDKLIDANGGPVWSEAGFTALHEKVRAELNDTVV 1150

Query: 1162 EIAKQVETILTTAYNINKRLKGKVDFTMAFALSDVKAQIEGLIFSGFATECGWKRLPDIL 1221
            +IAKQVE ILTT +NINKRLKG+VD +MA  LSD+KAQ+ GL++ GF T  G+KRL D L
Sbjct: 1151 DIAKQVERILTTVFNINKRLKGRVDMSMALGLSDIKAQMSGLVYRGFVTGNGFKRLGDTL 1210

Query: 1222 RYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYKELLNKIPKGMAIPDNVREIRWMLEE 1281
            RY++AIE+R+EKL VDP++DR  MLK+ESV   +++ +NK+P      D+V+EIRWM+EE
Sbjct: 1211 RYLQAIEKRLEKLAVDPHRDRAQMLKVESVQQAWQQWINKLPPARREDDDVKEIRWMIEE 1270

Query: 1282 LRVSYFAQQLGTPYPVSDKRIINAIE 1307
            LRVSYFAQQLGTPYP+SDKRI+ A++
Sbjct: 1271 LRVSYFAQQLGTPYPISDKRILQAMD 1296