Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 809 a.a., helicase, ATP-dependent (VIMSS) from Escherichia coli BW25113

 Score =  250 bits (638), Expect = 4e-70
 Identities = 164/466 (35%), Positives = 259/466 (55%), Gaps = 21/466 (4%)

Query: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLP-KICAELG-RGKYGLIGHTQPRRLA 144
           LPV+    ++  A+     V+++  TG+GK+T LP ++ A  G  GK  L+   +PRRLA
Sbjct: 4   LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILL---EPRRLA 60

Query: 145 ARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTI 204
           AR+VA R+AE +  + G  VGY++R  + +   T+++++T+G+L   IQ D  L+    +
Sbjct: 61  ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120

Query: 205 IIDEAHERSLNIDFILGYLKQLLPR-RPDLKVIITSATIDPERFSKHFSNAPIIEVSGRT 263
           I+DE HERSL  D  L  L  +    R DLK++I SAT+D +R  +    AP++   GR+
Sbjct: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180

Query: 264 YPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADALSK 323
           +PVE RY PL      +      + +  A  E+  +  G +L+F+ G  EI+   + L+ 
Sbjct: 181 FPVERRYLPLPAHQRFD------DAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS 234

Query: 324 RNLRDTEIVPLYARLSAGEQNKIF--QPHAGRRIVLATNVAETSLTVPGIKYVIDPGTAR 381
           R   D  + PLY  LS  +Q K     P   R++VLATN+AETSLT+ GI+ V+D    R
Sbjct: 235 RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294

Query: 382 ISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEILR 441
           ++R+  RT + RL  + +SQAS  QR GR GR E GI + L ++E        ++PEIL+
Sbjct: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354

Query: 442 TNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTESG 501
           ++L+ +++++   G  D     +++ P   N+    RLL+ LGA+  +      RL+  G
Sbjct: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE------RLSAQG 408

Query: 502 KQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSD 547
           +++A L  DPRLA M++ A           IA+ L  + PR   SD
Sbjct: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSD 453