Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 809 a.a., ATP-dependent helicase HrpB from Enterobacter asburiae PDN3

 Score =  261 bits (666), Expect = 2e-73
 Identities = 172/470 (36%), Positives = 260/470 (55%), Gaps = 21/470 (4%)

Query: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGR--GKYGLIGHTQPRRLA 144
           LPV+    ++  A+ H   V+++  TG+GK+T LP    + G   GK  L+   +PRRLA
Sbjct: 4   LPVAVILPELLAALHHAPQVLLSAPTGAGKSTWLPLQILKDGNISGKIILL---EPRRLA 60

Query: 145 ARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTI 204
           AR+VA R+AE +  + G  VGY++R    +   T+++++T+GIL   +QND  LN    +
Sbjct: 61  ARNVAQRLAELLNEKAGETVGYRMRAETCVGPTTRLEVVTEGILTRMLQNDPELNGVGLV 120

Query: 205 IIDEAHERSLNIDFILGYLKQLLPR-RPDLKVIITSATIDPERFSKHFSNAPIIEVSGRT 263
           I+DE HERSL  D  L  L  +    R DL+++I SAT+D ER  +   +AP+I   GR 
Sbjct: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLRLLIMSATLDNERLRQALPDAPVISSEGRA 180

Query: 264 YPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADALSK 323
           +PVE RY+PL      +      E +  A  EL  +  G +L+F+ G  EI+   + LS 
Sbjct: 181 FPVERRYQPLPSHQRFD------EAVAIATAELLRQEAGSLLLFLPGVGEIQRVQEQLST 234

Query: 324 RNLRDTEIVPLYARLSAGEQNKIFQPHAG--RRIVLATNVAETSLTVPGIKYVIDPGTAR 381
           R   D  + PLY  LS  EQ K   P     R++VLATN+AETSLT+ GI+ V+D    R
Sbjct: 235 RVGGDVLLCPLYGALSLQEQRKAILPAPAGQRKVVLATNIAETSLTIEGIRLVVDSAQER 294

Query: 382 ISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEILR 441
           ++ +  RT + +L  + ISQAS  QR GR GR E GIC+ L S E      + + PEIL+
Sbjct: 295 VASFDPRTGLTKLLTQRISQASMVQRAGRAGRLEPGICLHLTSAEQAERAAQQSTPEILQ 354

Query: 442 TNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTESG 501
           ++L+ +++ +   G  ++E   ++  P   N+     LL +LGA+  +      RLT  G
Sbjct: 355 SDLSGLVMDLLQWGYPNLEQLTWLNPPPVVNLTAARTLLTQLGALEGE------RLTARG 408

Query: 502 KQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSDKQQS 551
           +++A L  DPRLA M++ A     +     +A+ L  + PR   SD  Q+
Sbjct: 409 QKMAALGNDPRLAAMLVAAQGDDEIATAAKLAAILE-EPPRGGSSDLGQA 457