Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 1300 a.a., RNA helicase HrpA from Enterobacter asburiae PDN3

 Score = 1887 bits (4888), Expect = 0.0
 Identities = 919/1286 (71%), Positives = 1081/1286 (84%), Gaps = 1/1286 (0%)

Query: 22   LKKALGECLIKDRFRFSKRIDGASKIKNESARNAVFDEIALDIAQSMMVVEQRKQQMPKI 81
            L + L   +++D+ RF++R+ G  K+KN  A+ A++ E+A +I Q+   V  R+   P I
Sbjct: 12   LLQQLDSLMLRDKQRFARRLHGVKKVKNPDAQQAIYQEMAKEIEQAAGKVVLREAARPAI 71

Query: 82   EYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPR 141
             YP  LPVSQK+ DI +A+  HQVVIVAGETGSGKTTQLPKIC ELGRG  GLIGHTQPR
Sbjct: 72   TYPENLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPR 131

Query: 142  RLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQY 201
            RLAAR+VANRIAEE++TE GG +GYKVRF+D +SD T +KLMTDGILLAEIQ DR L QY
Sbjct: 132  RLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQY 191

Query: 202  DTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEVSG 261
            DTIIIDEAHERSLNIDF+LGYLK+LLPRRPDLK+IITSATIDPERFSKHF+NAPIIEVSG
Sbjct: 192  DTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSKHFNNAPIIEVSG 251

Query: 262  RTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADAL 321
            RTYPVEVRYRP+  + D +++RDQL+ IF AVDEL +E  GDILIFM+GEREIRDTADAL
Sbjct: 252  RTYPVEVRYRPIVEEAD-DTERDQLQAIFDAVDELGNESAGDILIFMSGEREIRDTADAL 310

Query: 322  SKRNLRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATNVAETSLTVPGIKYVIDPGTAR 381
            SKR+LR TEI+PLYARLS  EQN++FQPH GRRIVLATNVAETSLTVPGIKYVIDPGTAR
Sbjct: 311  SKRDLRHTEILPLYARLSNSEQNRVFQPHGGRRIVLATNVAETSLTVPGIKYVIDPGTAR 370

Query: 382  ISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEILR 441
            ISRYSYRTKVQRLPIEP+SQASANQRKGRCGR  EGICIRLYSE+DFLSRPEFTDPEILR
Sbjct: 371  ISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILR 430

Query: 442  TNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTESG 501
            TNLASVILQMTALGLGDI AFPFVEAPDKRNIQDGVRLLEELGAI    +    +LT  G
Sbjct: 431  TNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQATVYKLTPLG 490

Query: 502  KQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSDKQQSADDKHRRFNH 561
            +QL++LP+DPRLARMVLEA K GC++E MII SALSIQDPRERP DKQQ++D+KHRRF+ 
Sbjct: 491  RQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHD 550

Query: 562  EDSDFLTLVNLWHYIGQQQKALTSNQFRRQCKLDYLNYLRVREWQDVYTQLHQSTREMGF 621
            ++SDFL  VNLW+Y+G+QQKAL+SNQFRRQC++D+LNYLRVREWQD+YTQL Q  +E+G 
Sbjct: 551  KESDFLAFVNLWNYLGEQQKALSSNQFRRQCRVDFLNYLRVREWQDIYTQLRQVVKELGI 610

Query: 622  KLNDEPGSYHAVHSAILVGLLSHIGMKDQEKNEYHGARNARFNIFPASGLFKKQPKWVMS 681
             +N EP  Y  +H A+L GLLSHIGMKD EK EY GARNARF+IFP SGLFKK PKW M 
Sbjct: 611  PVNSEPAEYREIHIALLTGLLSHIGMKDAEKQEYTGARNARFSIFPGSGLFKKPPKWTMV 670

Query: 682  AELVETSKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHWSKKNAAVMAYEKVMLYGIPIV 741
            AELVETS+LW R+ A+I+P+W+EP+A+HL KRSYSEPHW +   AVMA EKV +YG+P+V
Sbjct: 671  AELVETSRLWGRIAARIDPEWVEPVAQHLLKRSYSEPHWERAQGAVMATEKVTVYGLPVV 730

Query: 742  PKRLVNYGTIDPVLSREIFIRSALVEGDWETKHAFFKQNRALLAEVEELEHKSRRRDILV 801
              R VNY  IDP LSRE+FIR ALVEGDW+T+HAFF++N  L AEVEELEHKSRRRDILV
Sbjct: 731  AARKVNYSQIDPALSRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILV 790

Query: 802  DDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLSFEKEMLFKGDASHITDLDYPN 861
            DDE LF+FYDQR+  EV+S RHFD+WWK AS++TPDLL+FEK ML K  A  ++ LDYPN
Sbjct: 791  DDEALFEFYDQRISHEVISARHFDSWWKKASKETPDLLNFEKSMLIKEGAESVSKLDYPN 850

Query: 862  FWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPHGFDWQIPGLRHELVVSLIKSL 921
            FWHQGNLKL+L+YQFEPG ++DGVTVHIPLP+LNQV+  GF+WQIPGLR ELV++LIKSL
Sbjct: 851  FWHQGNLKLRLTYQFEPGADADGVTVHIPLPLLNQVDEGGFEWQIPGLRRELVIALIKSL 910

Query: 922  PKTLRKNFVPAPNYADAFLARVTPFEMPLLDAMEKELRRMTGVTVLREDWKLDQLPAHLK 981
            PK +R+NFVPAPNYA+AFL RVTP E+PLLDA+E+E RRMTG T+ REDW  DQ+P HLK
Sbjct: 911  PKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALEREFRRMTGTTIDREDWNWDQVPDHLK 970

Query: 982  ITYRAVDHRNRKLNESCDLHELKESLKEKVQETLSQVADDDIEQRDLHTWSFGELPKVYQ 1041
            I++R VD +N+KL E   L ELKE+LK KVQETLS VADD IEQ  LH WSFG+LP+ Y+
Sbjct: 971  ISFRVVDDKNKKLLEGRSLSELKEALKGKVQETLSAVADDGIEQNGLHIWSFGQLPESYE 1030

Query: 1042 QKRGGFEVRAYPALVDKKDSVEIKLFETEQEQLSAMRAGQRRLILLNVPSPIKYLHANLP 1101
            QKRG ++V+A+PALVD++DSV IKLF+   EQ   M  G RRL+LLN+PSPIKYLH  LP
Sbjct: 1031 QKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQMMWRGLRRLLLLNIPSPIKYLHEKLP 1090

Query: 1102 NKSKLGLYFNPYGKVLDLIDDCIACGVDKLIEERGGMVWEPQAFEALKEHVRAELGDTVV 1161
            NK+KLGLYFNPYGKVLDLIDDCI+CGVDKLI E GG VW  + F  L E VRAEL DTVV
Sbjct: 1091 NKAKLGLYFNPYGKVLDLIDDCISCGVDKLIHEAGGPVWTEEGFAQLHEKVRAELNDTVV 1150

Query: 1162 EIAKQVETILTTAYNINKRLKGKVDFTMAFALSDVKAQIEGLIFSGFATECGWKRLPDIL 1221
            EIAKQVE ILT  +NINKRLKG+VD TMA  LSDVKAQ+ GL++ GF T  G+KRL D L
Sbjct: 1151 EIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDVKAQMAGLVYRGFVTGNGFKRLGDTL 1210

Query: 1222 RYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYKELLNKIPKGMAIPDNVREIRWMLEE 1281
            RY++AIE+R+EK+ +DP++DR  MLK+ESV   +++ LNK+P      ++V+ IRWM+EE
Sbjct: 1211 RYLQAIEKRLEKMAIDPHRDRAQMLKVESVQQAWQQWLNKLPPARRDDEDVQAIRWMIEE 1270

Query: 1282 LRVSYFAQQLGTPYPVSDKRIINAIE 1307
            LRVS+FAQQLGTPYP+SDKRI+ A+E
Sbjct: 1271 LRVSFFAQQLGTPYPISDKRILQAME 1296