Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 1300 a.a., ATP-dependent RNA helicase HrpA from Escherichia coli ECRC62

 Score = 1885 bits (4882), Expect = 0.0
 Identities = 922/1287 (71%), Positives = 1082/1287 (84%), Gaps = 1/1287 (0%)

Query: 21   SLKKALGECLIKDRFRFSKRIDGASKIKNESARNAVFDEIALDIAQSMMVVEQRKQQMPK 80
            +L++ L   + +DR RFS+R+ G  K+KN  A+ A+F E+A +I Q+   V  R+   P+
Sbjct: 11   ALQQRLDSLMPRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDQAAGKVLLREAARPE 70

Query: 81   IEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQP 140
            I YP  LPVSQK+ DI +AI  HQVVIVAGETGSGKTTQLPKIC ELGRG  GLIGHTQP
Sbjct: 71   ITYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQP 130

Query: 141  RRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQ 200
            RRLAAR+VANRIAEE++TE GG +GYKVRF+D +SD T +KLMTDGILLAEIQ DR L Q
Sbjct: 131  RRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQ 190

Query: 201  YDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEVS 260
            YDTIIIDEAHERSLNIDF+LGYLK+LLPRRPDLK+IITSATIDPERFS+HF+NAPIIEVS
Sbjct: 191  YDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVS 250

Query: 261  GRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADA 320
            GRTYPVEVRYRP+  + D +++RDQL+ IF AVDEL  E  GDILIFM+GEREIRDTADA
Sbjct: 251  GRTYPVEVRYRPIVEEAD-DTERDQLQAIFDAVDELSQESPGDILIFMSGEREIRDTADA 309

Query: 321  LSKRNLRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATNVAETSLTVPGIKYVIDPGTA 380
            L+K NLR TEI+PLYARLS  EQN++FQ H+GRRIVLATNVAETSLTVPGIKYVIDPGTA
Sbjct: 310  LNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTA 369

Query: 381  RISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEIL 440
            RISRYSYRTKVQRLPIEPISQASANQRKGRCGR  EGICIRLYSE+DFLSRPEFTDPEIL
Sbjct: 370  RISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEIL 429

Query: 441  RTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTES 500
            RTNLASVILQMTALGLGDI AFPFVEAPDKRNIQDGVRLLEELGAI    +    +LT  
Sbjct: 430  RTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPL 489

Query: 501  GKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSDKQQSADDKHRRFN 560
            G+QL++LP+DPRLARMVLEA K GC++E MII SALSIQDPRERP DKQQ++D+KHRRF+
Sbjct: 490  GRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFH 549

Query: 561  HEDSDFLTLVNLWHYIGQQQKALTSNQFRRQCKLDYLNYLRVREWQDVYTQLHQSTREMG 620
             ++SDFL  VNLW+Y+G+QQKAL+SN FRR C+ DYLNYLRVREWQD+YTQL Q  +E+G
Sbjct: 550  DKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELG 609

Query: 621  FKLNDEPGSYHAVHSAILVGLLSHIGMKDQEKNEYHGARNARFNIFPASGLFKKQPKWVM 680
              +N EP  Y  +H A+L GLLSHIGMKD +K EY GARNARF+IFP SGLFKK PKWVM
Sbjct: 610  IPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVM 669

Query: 681  SAELVETSKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHWSKKNAAVMAYEKVMLYGIPI 740
             AELVETS+LW R+ A+I+P+W+EP+A+HL KR+YSEPHW +   AVMA EKV +YG+PI
Sbjct: 670  VAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPI 729

Query: 741  VPKRLVNYGTIDPVLSREIFIRSALVEGDWETKHAFFKQNRALLAEVEELEHKSRRRDIL 800
            V  R VNY  IDP L RE+FIR ALVEGDW+T+HAFF++N  L AEVEELEHKSRRRDIL
Sbjct: 730  VAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDIL 789

Query: 801  VDDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLSFEKEMLFKGDASHITDLDYP 860
            VDDE LF+FYDQR+  +V+S RHFD+WWK  SR+TPDLL+FEK ML K  A  I+ LDYP
Sbjct: 790  VDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYP 849

Query: 861  NFWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPHGFDWQIPGLRHELVVSLIKS 920
            NFWHQGNLKL+LSYQFEPG ++DGVTVHIPLP+LNQVE  GF+WQIPGLR ELV++LIKS
Sbjct: 850  NFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRRELVIALIKS 909

Query: 921  LPKTLRKNFVPAPNYADAFLARVTPFEMPLLDAMEKELRRMTGVTVLREDWKLDQLPAHL 980
            LPK +R+NFVPAPNYA+AFL RVTP E+PLLD++E+ELRRMTGVTV REDW  DQ+P HL
Sbjct: 910  LPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHL 969

Query: 981  KITYRAVDHRNRKLNESCDLHELKESLKEKVQETLSQVADDDIEQRDLHTWSFGELPKVY 1040
            KIT+R VD +N+KL E   L +LK++LK KVQETLS VADD IEQ  LH WSFG+LP+ Y
Sbjct: 970  KITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESY 1029

Query: 1041 QQKRGGFEVRAYPALVDKKDSVEIKLFETEQEQLSAMRAGQRRLILLNVPSPIKYLHANL 1100
            +QKRG ++V+A+PALVD++DSV IKLF+   EQ  AM  G RRL+LLN+PSPIKYLH  L
Sbjct: 1030 EQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPSPIKYLHEKL 1089

Query: 1101 PNKSKLGLYFNPYGKVLDLIDDCIACGVDKLIEERGGMVWEPQAFEALKEHVRAELGDTV 1160
            PNK+KLGLYFNPYGKVL+LIDDCI+CGVDKLI+  GG VW  + F AL E VRAEL DTV
Sbjct: 1090 PNKAKLGLYFNPYGKVLELIDDCISCGVDKLIDANGGPVWTEEGFAALHEKVRAELNDTV 1149

Query: 1161 VEIAKQVETILTTAYNINKRLKGKVDFTMAFALSDVKAQIEGLIFSGFATECGWKRLPDI 1220
            V+IAKQVE ILT  +NINKRLKG+VD TMA  LSD+KAQ+ GL++ GF T  G+KRL D 
Sbjct: 1150 VDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFKRLGDT 1209

Query: 1221 LRYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYKELLNKIPKGMAIPDNVREIRWMLE 1280
            LRY++AIE+R+EKL VDP++DR  MLK+E+V   +++ +NK+P      ++V+EIRWM+E
Sbjct: 1210 LRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVKEIRWMIE 1269

Query: 1281 ELRVSYFAQQLGTPYPVSDKRIINAIE 1307
            ELRVSYFAQQLGTPYP+SDKRI+ A+E
Sbjct: 1270 ELRVSYFAQQLGTPYPISDKRILQAME 1296