Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 1295 a.a., ATP-dependent RNA helicase HrpA from Dickeya dianthicola ME23

 Score = 1816 bits (4704), Expect = 0.0
 Identities = 893/1286 (69%), Positives = 1058/1286 (82%), Gaps = 2/1286 (0%)

Query: 21   SLKKALGECLIKDRFRFSKRIDGASKIKNESARNAVFDEIALDIAQSMMVVEQRKQQMPK 80
            +L+  L   +++DR R  +R+ GA K+ N  A+ ++  EI  +I  + + VEQRK  +P 
Sbjct: 7    ALEPQLNALMLRDRQRLRRRLQGAMKVGNPQAQVSIAQEIGREIDAARLRVEQRKASLPA 66

Query: 81   IEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQP 140
            I YP  LPVSQKR+ I  AI  HQVVIVAGETGSGKTTQLPK+C ELGRG  GLIGHTQP
Sbjct: 67   IRYPEALPVSQKREAILSAIRDHQVVIVAGETGSGKTTQLPKMCLELGRGVTGLIGHTQP 126

Query: 141  RRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQ 200
            RRLAARSVA+RIA E+ET LGG VGYKVRF DQI D T +KLMTDGILLAEIQ DR L Q
Sbjct: 127  RRLAARSVADRIAAELETPLGGAVGYKVRFNDQIGDNTLVKLMTDGILLAEIQQDRLLMQ 186

Query: 201  YDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEVS 260
            YDT+IIDEAHERSLNIDFILGYL+QLLPRRPDLKVIITSATIDP+RFS+HF NAPIIEVS
Sbjct: 187  YDTLIIDEAHERSLNIDFILGYLRQLLPRRPDLKVIITSATIDPQRFSRHFGNAPIIEVS 246

Query: 261  GRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADA 320
            GRTYPV+VRYRP+  ++  + DRDQL+ +  AVDELC EG GDIL+FM+GEREIRDTADA
Sbjct: 247  GRTYPVDVRYRPVV-EEAQDGDRDQLQAMLDAVDELCREGPGDILVFMSGEREIRDTADA 305

Query: 321  LSKRNLRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATNVAETSLTVPGIKYVIDPGTA 380
            L+K++L  TEI+PLYARLS  EQN++FQ H GRRIVLATNVAETSLTVPGI+YVIDPGTA
Sbjct: 306  LNKQDLPHTEILPLYARLSNQEQNRVFQSHHGRRIVLATNVAETSLTVPGIRYVIDPGTA 365

Query: 381  RISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEIL 440
            RISRYSYRTKVQRLPIEP+SQASANQRKGRCGR   GICIRLYSE+DFLSRP FTDPEIL
Sbjct: 366  RISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVAAGICIRLYSEQDFLSRPAFTDPEIL 425

Query: 441  RTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTES 500
            RTNLASVILQMTALGLGDI AFPFV+APDKRNIQDGVRLLEEL A+     D   RLT  
Sbjct: 426  RTNLASVILQMTALGLGDIAAFPFVDAPDKRNIQDGVRLLEELSALQSS-DDGHYRLTPQ 484

Query: 501  GKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSDKQQSADDKHRRFN 560
            G+ LA+LPIDPRLARMVLEA +  C++E MII +ALSIQDPRERP +K+Q+A++KHRRF 
Sbjct: 485  GRHLAQLPIDPRLARMVLEARQTSCVREAMIITAALSIQDPRERPVEKKQAAEEKHRRFV 544

Query: 561  HEDSDFLTLVNLWHYIGQQQKALTSNQFRRQCKLDYLNYLRVREWQDVYTQLHQSTREMG 620
             ++SDFLT VNLW Y+ +QQKAL+S+QFR+ C+ DYLNYLRVREWQD+YTQL Q  +E+G
Sbjct: 545  DKESDFLTFVNLWDYLQEQQKALSSSQFRKLCRSDYLNYLRVREWQDIYTQLRQVVKELG 604

Query: 621  FKLNDEPGSYHAVHSAILVGLLSHIGMKDQEKNEYHGARNARFNIFPASGLFKKQPKWVM 680
            F +N EP  Y ++H A+L GLLSHIG KD EK E+ GARN RF IFP SGLFKK PKW +
Sbjct: 605  FPVNSEPADYRSLHGALLTGLLSHIGQKDVEKQEFSGARNTRFAIFPGSGLFKKPPKWAI 664

Query: 681  SAELVETSKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHWSKKNAAVMAYEKVMLYGIPI 740
             AELVETS+LW R+ A+IEP+W+EPLA+HL KRSYSEPHW K   AVMA EKV LYG+P+
Sbjct: 665  VAELVETSRLWGRIAARIEPEWVEPLAQHLIKRSYSEPHWEKAQGAVMAQEKVTLYGLPL 724

Query: 741  VPKRLVNYGTIDPVLSREIFIRSALVEGDWETKHAFFKQNRALLAEVEELEHKSRRRDIL 800
            V  R VNYG IDPV+SRE+FIR ALVEGDW+T+HAFF+ N+ L +EVEELE+KSRRRDIL
Sbjct: 725  VAARKVNYGAIDPVVSRELFIRHALVEGDWQTQHAFFRANQKLRSEVEELENKSRRRDIL 784

Query: 801  VDDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLSFEKEMLFKGDASHITDLDYP 860
            VDDE LF FYDQR+  ++VS RHFD WW  AS+  PD L+FEK ML K  A  ++ LDYP
Sbjct: 785  VDDEMLFAFYDQRLPQDLVSSRHFDNWWTQASKTDPDRLNFEKTMLIKDGAERVSALDYP 844

Query: 861  NFWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPHGFDWQIPGLRHELVVSLIKS 920
            N W QG L+L+L+YQFEPG ++DGVTVHIPLP+LNQV+  GF+WQIPGLR ++VV+LIKS
Sbjct: 845  NHWQQGELRLRLTYQFEPGADADGVTVHIPLPVLNQVKEDGFEWQIPGLRRDVVVALIKS 904

Query: 921  LPKTLRKNFVPAPNYADAFLARVTPFEMPLLDAMEKELRRMTGVTVLREDWKLDQLPAHL 980
            LPK +R+NFVPAPNYADAFLARVTP E  LL+A+E+ELR+MTGVTV RE W+ DQ+  HL
Sbjct: 905  LPKPIRRNFVPAPNYADAFLARVTPLEKGLLEALERELRQMTGVTVDREAWQWDQVADHL 964

Query: 981  KITYRAVDHRNRKLNESCDLHELKESLKEKVQETLSQVADDDIEQRDLHTWSFGELPKVY 1040
            K+T+R VD +NR L E  +L  LK+ L+EKVQ+TLS VADD IEQR+LH WSFG+LP+ Y
Sbjct: 965  KMTFRVVDEKNRTLREGKNLRALKDQLQEKVQQTLSAVADDGIEQRELHIWSFGDLPERY 1024

Query: 1041 QQKRGGFEVRAYPALVDKKDSVEIKLFETEQEQLSAMRAGQRRLILLNVPSPIKYLHANL 1100
            +QKRGG+ V+AYPALVD+KDSV I+LF+T  +Q   M  GQRRL+LLN+PSPIKYLH  L
Sbjct: 1025 EQKRGGYAVKAYPALVDEKDSVAIRLFDTPHQQQQMMWRGQRRLLLLNIPSPIKYLHEKL 1084

Query: 1101 PNKSKLGLYFNPYGKVLDLIDDCIACGVDKLIEERGGMVWEPQAFEALKEHVRAELGDTV 1160
            PNK+KLGLYFNPYGKVL+LIDDCIACGVDKL+   GG VW+  AF  L E VRAEL DTV
Sbjct: 1085 PNKAKLGLYFNPYGKVLELIDDCIACGVDKLMTVAGGPVWQEDAFRQLHERVRAELNDTV 1144

Query: 1161 VEIAKQVETILTTAYNINKRLKGKVDFTMAFALSDVKAQIEGLIFSGFATECGWKRLPDI 1220
            V+IA+QVE ILT  ++INKRLKG+VD  +A ALSD+K+Q+ GL+F GF T+ GWKRLPD+
Sbjct: 1145 VDIAQQVEQILTAVFSINKRLKGRVDMALALALSDIKSQMSGLVFRGFVTDNGWKRLPDV 1204

Query: 1221 LRYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYKELLNKIPKGMAIPDNVREIRWMLE 1280
            LRY++AIERR++KL  D ++DR  MLK+E V   +++ LN +P      D+V+ IRWM+E
Sbjct: 1205 LRYLQAIERRLDKLAQDVHRDRAQMLKVEQVQQAWQQWLNTLPPERREDDDVKAIRWMIE 1264

Query: 1281 ELRVSYFAQQLGTPYPVSDKRIINAI 1306
            ELRVSYFAQQLGTPYPVSDKRI+ A+
Sbjct: 1265 ELRVSYFAQQLGTPYPVSDKRILQAM 1290