Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 823 a.a., ATP-dependent helicase HrpB from Dickeya dadantii 3937

 Score =  254 bits (650), Expect = 2e-71
 Identities = 168/480 (35%), Positives = 256/480 (53%), Gaps = 18/480 (3%)

Query: 85  ALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLA 144
           +L PVS   DD+ QA+     V++   TG+GK+T LP    +   G  G I   +PRRLA
Sbjct: 2   SLPPVSAVLDDVIQALHTAPQVLLHAPTGAGKSTWLPLQLLQRS-GFSGRIIMLEPRRLA 60

Query: 145 ARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTI 204
           A+SVA R+AE +    G  VGY++R   ++S QT+++++T+GIL   +Q+D  L+    +
Sbjct: 61  AKSVAFRLAEWLGETPGQTVGYRMRSESRVSSQTRLEVVTEGILTRMLQHDPALDGVSLV 120

Query: 205 IIDEAHERSLNIDFILGYLKQLLPR-RPDLKVIITSATIDPERFSKHFSNAPIIEVSGRT 263
           I+DE HERSL  D  L  L  +    R DLK++I SAT+D  R S     +  +   GR+
Sbjct: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNSRLSSLLPQSLSVSSQGRS 180

Query: 264 YPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADALSK 323
           +PVE  Y+ +   +  E      E   + +  L  E  G +L+F+ G  EI+     L  
Sbjct: 181 WPVERHYQTVGSQERLE------EAAARLIYRLLQEETGSLLVFLPGVAEIKRLQTLLEN 234

Query: 324 RNLRDTEIVPLYARLSAGEQNKIFQPHAG--RRIVLATNVAETSLTVPGIKYVIDPGTAR 381
                 +I PLY  L+  EQ K   P A   R++VLATN+AETSLT+ GI+ V+D G  R
Sbjct: 235 AAPTAVDICPLYGALTLAEQQKAILPAAAGRRKVVLATNIAETSLTIEGIRVVVDCGLER 294

Query: 382 ISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEILR 441
           ++ +  +T + RL  + ISQAS  QR GR GR E G+C  L++ E        ++PEIL 
Sbjct: 295 VALFDVKTGLTRLTTQRISQASMVQRAGRAGRLEPGVCWHLFAREQAERAAAQSEPEILH 354

Query: 442 TNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTESG 501
           ++L+ + L +   G  D+    +++ P +  +    RLL +LG       D ++RLT  G
Sbjct: 355 SDLSGLRLDLLQWGCSDVAQLCWLDTPPQPALLAADRLLTQLGTC-----DAQQRLTADG 409

Query: 502 KQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSDKQQSADDKHRRFNH 561
           +++A L  DPRLA M+  A +         + +A+  + PR   +     +D  HR  NH
Sbjct: 410 RKMAALGSDPRLAAMLHAAGQDPDALATAALLAAIIEEPPR---AGSPNLSDALHRPANH 466