Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 808 a.a., ATP-dependent helicase HrpB from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  241 bits (615), Expect = 2e-67
 Identities = 155/458 (33%), Positives = 246/458 (53%), Gaps = 20/458 (4%)

Query: 86  LLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELG--RGKYGLIGHTQPRRL 143
           +LP+    + +  A++     ++A   G+GKTT +P    +     GK  ++   +PRRL
Sbjct: 1   MLPIHAVLEPLKAALSAGNTAVLAAPPGAGKTTVVPLALLDQPWLEGKVLVL---EPRRL 57

Query: 144 AARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDT 203
           AAR+ A+R+A  +  + GG VGY+ R   +I   T+I+++T+G+    I +D  L+    
Sbjct: 58  AARAAADRMAATLGEQPGGTVGYRTRLQSRIGPNTRIEVITEGVFTRMILDDPGLDGVGA 117

Query: 204 IIIDEAHERSLNIDFILGYLKQLLPR-RPDLKVIITSATIDPERFSKHFSNAPIIEVSGR 262
           ++ DE HERSL+ D  L   +      R DL++++ SAT+D    S+    AP+IE  GR
Sbjct: 118 VLFDEFHERSLDADLGLALARDTQKLLREDLRLLVMSATLDVVGVSRLLDGAPMIEAEGR 177

Query: 263 TYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADALS 322
            +PVE RY    G + SE      E + +A      E  G +L+F+ G+ EI   A  ++
Sbjct: 178 AWPVETRY---LGRNPSERFE---EAVARACLTALGEETGSVLVFLPGQGEIHRVARLVN 231

Query: 323 KR-NLRDTEIVPLYARLSAGEQNKIFQPHA--GRRIVLATNVAETSLTVPGIKYVIDPGT 379
           +R  L + ++VPLY  L   EQ++  +P A   R++VLAT+VAETSLT+ G++ VID G 
Sbjct: 232 ERLRLPNIDVVPLYGGLDRAEQDRAIEPAAVGRRKLVLATSVAETSLTIEGVRVVIDGGL 291

Query: 380 ARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEI 439
           +R+ R+   + + RL    +S++SA QR+GR GRTE G+C RL+ EE          PEI
Sbjct: 292 SRVPRFEPSSGLTRLATVKVSRSSAEQRRGRAGRTEPGVCYRLWDEEQTRGLVPHQRPEI 351

Query: 440 LRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTE 499
              +L  + L +   G    E    ++ P    + +  ++L  LGA+     D    L++
Sbjct: 352 QEADLTGLALDLARWGARSAEGLALLDPPPAGALAEARKVLTRLGAL-----DADGGLSK 406

Query: 500 SGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALS 537
            G +L ++P+ PRL  MV  AS  G       IA+ LS
Sbjct: 407 HGLRLTKIPLSPRLGHMVAVASDAGDAMTGARIAAVLS 444