Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 1331 a.a., ATP-dependent RNA helicase HrpB from Alteromonas macleodii MIT1002

 Score = 1449 bits (3752), Expect = 0.0
 Identities = 748/1323 (56%), Positives = 956/1323 (72%), Gaps = 50/1323 (3%)

Query: 22   LKKALGECLIKDRFRFSKRID---------------GASK------------IKNESARN 54
            L   L +CL  D+FR  +RI                GA K            + +E +  
Sbjct: 10   LYNKLDDCLSADKFRLKRRITQLAQKVNDTSGVEGKGAEKNAANSKGSKRDSVVSEESLK 69

Query: 55   AVFDEIALDIAQSMMVVEQRKQQMPKIEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGS 114
            A F+++  DI  S+     RK  +PK+EYP L PVS K++DI +AIA++QVVIVAGETGS
Sbjct: 70   AQFEKLEGDINASIEKRNWRKDNLPKVEYPPL-PVSDKKEDIKEAIANNQVVIVAGETGS 128

Query: 115  GKTTQLPKICAELGRGKYGLIGHTQPRRLAARSVANRIAEEMETELGGFVGYKVRFTDQI 174
            GKTTQLPKIC ELGRG  G+I HTQPRRLAARSVA RIAEE+ T LG  VG+K+RF+DQ+
Sbjct: 129  GKTTQLPKICLELGRGVNGMIAHTQPRRLAARSVATRIAEELNTPLGEKVGFKIRFSDQV 188

Query: 175  SDQTQIKLMTDGILLAEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLK 234
            S+++ +KLMTDG+LLAE+Q DRFLNQYDTIIIDEAHERSLNIDF+LGYL+QLL +RPDLK
Sbjct: 189  SERSYVKLMTDGMLLAEMQQDRFLNQYDTIIIDEAHERSLNIDFLLGYLRQLLDKRPDLK 248

Query: 235  VIITSATIDPERFSKHFSNAPIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVD 294
            +IITSATIDPERFSKHF+NAPIIEVSGRTYPVE+RY      +D++ D DQ + I  AVD
Sbjct: 249  LIITSATIDPERFSKHFNNAPIIEVSGRTYPVEIRYH---APEDNDDDIDQSDAIVNAVD 305

Query: 295  ELCDEGLGDILIFMNGEREIRDTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPHAGRR 354
            EL  E  GDIL+F++GEREIRDT DALSK++ R+TEIVPLYARLSA EQN+IFQ H+GRR
Sbjct: 306  ELMREAPGDILVFLSGEREIRDTQDALSKQHYRNTEIVPLYARLSAAEQNRIFQSHSGRR 365

Query: 355  IVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRT 414
            IVLATNVAETSLTVPGIKYVIDPG ARISRYS R+KVQRLPIEPISQASANQR GRCGR 
Sbjct: 366  IVLATNVAETSLTVPGIKYVIDPGFARISRYSARSKVQRLPIEPISQASANQRAGRCGRV 425

Query: 415  EEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQ 474
             +GICIRLYSE+D+L RPEFTDPEILRTNLASVILQM ALGLGDI AFPFV+ PD RNI 
Sbjct: 426  SDGICIRLYSEDDYLGRPEFTDPEILRTNLASVILQMLALGLGDIAAFPFVQPPDNRNIN 485

Query: 475  DGVRLLEELGAI-----NDQIKDP-KKRLTESGKQLARLPIDPRLARMVLEASKLGCLKE 528
            DG RLLEE+ AI     N + K   K +LT  G+Q+ARLPIDPR ARMV+EA +   L E
Sbjct: 486  DGFRLLEEIQAIAKGKDNRKTKQSGKMQLTPLGRQVARLPIDPRYARMVIEAERTNALSE 545

Query: 529  VMIIASALSIQDPRERPSDKQQSADDKHRRFNHEDSDFLTLVNLWHYIGQQQKALTSNQF 588
            VM+IA+ LSIQDPRERP +K+Q AD+KH  ++ +DSDF++L NLW    +QQ AL+ NQ 
Sbjct: 546  VMVIAAGLSIQDPRERPQEKRQQADEKHSEYHDKDSDFISLYNLWVAFREQQNALSQNQL 605

Query: 589  RRQCKLDYLNYLRVREWQDVYTQLHQSTREMGFKLNDEPGSYHAVHSAILVGLLSHIGMK 648
            R+ CK +++NYLR+REWQD+ +QL +S  E+GF ++ +   Y A+H AI  GLLSH+G K
Sbjct: 606  RKWCKQNFINYLRMREWQDIVSQLKKSIAELGFGISKQEADYQAIHQAIASGLLSHMGFK 665

Query: 649  DQEKNEYHGARNARFNIFPASGLFKKQPKWVMSAELVETSKLWARVVAKIEPDWIEPLAK 708
            D+E+ EY G+RN+RF IFP SGL K QPKWVM+AELVETSKL+AR+VAKI+P W+EPLA+
Sbjct: 666  DKER-EYMGSRNSRFLIFPGSGLSKSQPKWVMAAELVETSKLFARMVAKIDPAWVEPLAE 724

Query: 709  HLSKRSYSEPHWSKKNAAVMAYEKVMLYGIPIVPKRLVNYGTIDPVLSREIFIRSALVEG 768
            H+ +RSYSEPHWSKK  AV+A+EKV L+G+PIV KR   Y  IDP +  E+FIR ALVEG
Sbjct: 725  HVVQRSYSEPHWSKKRGAVIAFEKVTLFGLPIVMKRAKVYSLIDPPICHELFIREALVEG 784

Query: 769  DWETKHAFFKQNRALLAEVEELEHKSRRRDILVDDEELFQFYDQRVGTEVVSGRHFDAWW 828
            + +  ++F ++N+ALL + +E E K+RRRD++VDDEEL  FY +R+  E  +   F  W+
Sbjct: 785  NTKLNYSFLQENQALLEQADEFEQKTRRRDLIVDDEELVSFYAKRIPVEANNDAAFKKWF 844

Query: 829  KTASRKTPDLLSFEKEMLFKGDASHITDLDYPNFWHQGNLKLKLSYQFEPGENSDGVTVH 888
            K     + D L+F++E +++          +P+ W QGN+ L L Y FEP    DGVTV 
Sbjct: 845  K--QHGSNDSLTFKEEDVYRQQPGQSVANAFPDVWRQGNITLPLRYNFEPNAEDDGVTVV 902

Query: 889  IPLPILNQVEPHGFDWQIPGLRHELVVSLIKSLPKTLRKNFVPAPNYADAFLARVTPFE- 947
            IPLP+LNQV+  GFDW +PGLRH+L+V LIK+LPK LR+NFVPAPN+A+A LA +   + 
Sbjct: 903  IPLPVLNQVDNVGFDWLVPGLRHDLIVGLIKTLPKRLRRNFVPAPNFAEACLADICETDK 962

Query: 948  ----MPLLDAMEKELRRMTGVTVLREDWKLDQLPAHLKITYRAVDHRNRKLNESCDLHEL 1003
                +PLL+A+  +LR+MTGV +  E+W L+QL  HLK+ +  V+     + +  DLH L
Sbjct: 963  NNRPVPLLEAVTDKLRKMTGVIIESEEWNLEQLDKHLKMHFAVVNDNGDDIAKGDDLHAL 1022

Query: 1004 KESLKEKVQETLSQVADDDIEQRDLHTWSFGELPKVYQQKRGGFEVRAYPALVDKKDSVE 1063
            K+    +V++T  + A  ++E+ ++  W F  LP+ + QK GGFEV+A+PALV K D V+
Sbjct: 1023 KQQCAGQVKQTFEKAATPELERNNIEQWDFESLPETFVQKVGGFEVQAFPALVQKGDKVD 1082

Query: 1064 IKLFETEQEQLSAMRAGQRRLILLNVPSPIKYLHANLPNKSKLGLYFNPYGKVLDLIDDC 1123
            I L E   +     + G   LI   +PSP+ YL + LPNK+KLGLYFNP+G+V  LIDDC
Sbjct: 1083 IALIEEADKAQVLHKQGVNVLIKNAMPSPLNYLQSKLPNKAKLGLYFNPFGQVKALIDDC 1142

Query: 1124 IACGVDKLIEE----RGGMVWEPQAFEALKEHVRAELGDTVVEIAKQVETILTTAYNINK 1179
            I  G+D ++ +        +     FEA  E  RA + D V+EIA QVE  LT A+   K
Sbjct: 1143 IFAGIDAIVSDYCKTNNTDIRSKADFEACLEIARANINDRVLEIATQVEQGLTLAHQCQK 1202

Query: 1180 RLKGKVDFTMAFALSDVKAQIEGLIFSGFATECGWKRLPDILRYMRAIERRMEKLPVDPN 1239
            ++KG V  TM  AL D KA +  L+F GF +E G  RL D  RY++ + RR+EKLP+DPN
Sbjct: 1203 QMKGNVPLTMINALGDCKAHLASLVFPGFVSEIGESRLDDWNRYIKGLARRLEKLPIDPN 1262

Query: 1240 KDRLHMLKIESVANKYKELLNKIPKGMAIPDNVREIRWMLEELRVSYFAQQLGTPYPVSD 1299
            KDR+H + +E    ++++  +K PKG  +P  + ++RWM+EELRVS FAQQLGT YP+S 
Sbjct: 1263 KDRMHQVTVEKSIKEWEKACSKYPKG-KVPQALNDVRWMIEELRVSLFAQQLGTAYPISA 1321

Query: 1300 KRI 1302
            KRI
Sbjct: 1322 KRI 1324