Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 880 a.a., ATP-dependent RNA helicase HrpB from Alteromonas macleodii MIT1002

 Score =  176 bits (445), Expect = 1e-47
 Identities = 132/441 (29%), Positives = 218/441 (49%), Gaps = 25/441 (5%)

Query: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146
           LP  +    + +A+A   V+I A   G+GK+T LP   + L     G I   QPRR+  R
Sbjct: 8   LPAYELVTPLEEAVAASNVIIGA-PPGAGKSTVLP--LSLLKSSLKGKILLMQPRRVVVR 64

Query: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTIII 206
           ++A+ +A ++   +G  VGY+++   + S  T+++++T+G+L   IQ D  L+    I+ 
Sbjct: 65  NLADYLARQLNENVGETVGYRIKGESKTSSATRLEIITEGVLTRMIQQDPELDGVAAIVF 124

Query: 207 DEAHERSLNIDFILGYLKQLLPR-RPDLKVIITSATIDP---ERFSKHFSNAPIIEVS-- 260
           DE HERS++ DF L    ++    R DL++++ SAT+D    +      S  P++ ++  
Sbjct: 125 DEFHERSIHSDFGLALALEVQSGLRDDLRLVVMSATLDVAPLQTLLNAHSVLPVVNLNTQ 184

Query: 261 GRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADA 320
           GR + V++RY             + +      + +   E  GDIL+F+ G   I   A  
Sbjct: 185 GRMFAVDIRYT------QDVQAHELVPKTCNIIKQAVGEHDGDILVFLPGRGSINAVAKE 238

Query: 321 LSK-RNLRDTEIVPLYARLSAGEQNKIF--QPHAGRRIVLATNVAETSLTVPGIKYVIDP 377
           +       D  +  LY  LS   Q       P   R+I+L+TN+AETSLT+ G+  VID 
Sbjct: 239 IKGLAESADMAVHMLYGALSKSVQQAAITPDPQGRRKIILSTNIAETSLTIEGVTVVIDS 298

Query: 378 GTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDP 437
                ++Y   + +  L  + ISQASA QR GR GR   G C RL S+  F    ++   
Sbjct: 299 LWENSAQYHPSSDITALTQQRISQASAIQRAGRAGRVMAGTCYRLCSKSSFERLAKYNAA 358

Query: 438 EILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRL 497
           +I + +L+S +L   A G    +    +  P +   Q   + L+ + AI+      +  +
Sbjct: 359 QIEKEDLSSFLLDTLAWG-SSPDTLALLTKPTQAQQQVAQQKLQRVNAIS------QSSI 411

Query: 498 TESGKQLARLPIDPRLARMVL 518
           T  G+ LA+LP  P LA ++L
Sbjct: 412 TPYGRALAQLPCQPHLAHLLL 432