Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 828 a.a., helicase from Agrobacterium fabrum C58

 Score =  281 bits (718), Expect = 2e-79
 Identities = 182/490 (37%), Positives = 280/490 (57%), Gaps = 21/490 (4%)

Query: 80  KIEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLP-KICAELGRGKYGLIGHT 138
           K E P L PVS    DIAQ +A  +  +++   G+GKTT +P ++  E  RG  G I   
Sbjct: 9   KTELPEL-PVSAVLGDIAQVLAAKKRAVLSAPPGAGKTTLVPLRLLHEDWRGD-GKIILL 66

Query: 139 QPRRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFL 198
           +PRRLAAR+ A R+AE +   +G  VGY++R  +++S +T+I+++T+G+    + +D  L
Sbjct: 67  EPRRLAARAAAGRMAELLRENVGETVGYRMRLDNRVSSKTRIEVVTEGVFARMVLDDPEL 126

Query: 199 NQYDTIIIDEAHERSLNIDFILGY-LKQLLPRRPDLKVIITSATIDPERFSKHFSNAPII 257
           +   T+I DE HERSL+ DF L   L      R DL++++ SAT+D ER      +AP+I
Sbjct: 127 SGVSTVIFDEFHERSLDGDFGLALALDVQAGLREDLRILVMSATLDVERIGALMGDAPVI 186

Query: 258 EVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDT 317
           +  GRT+P+++RY      ++        E + +A+ E      G IL F+ G+ EI  T
Sbjct: 187 QSLGRTFPIDIRY------EERWQGIHVDEKVAKAITEAHASETGSILAFLPGQAEITRT 240

Query: 318 ADALSKRNLRDTEIVPLYARLSAGEQNKIFQPHAG--RRIVLATNVAETSLTVPGIKYVI 375
           A  L  R   DT+I+PLY  LS  EQ+   +P  G  R+IVLAT++AETS+T+ G++ VI
Sbjct: 241 ASRLEGRFPDDTDIIPLYGNLSQKEQDAAIKPAPGGRRKIVLATSIAETSITIDGVRVVI 300

Query: 376 DPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFT 435
           D G  R+  +   T + RL    +S+ASA+QR GR GRTE GI IRL+ +    +   FT
Sbjct: 301 DSGLQRLPVFEPATGITRLETVRVSRASADQRAGRAGRTEPGIAIRLWHQGQTAALNAFT 360

Query: 436 DPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKK 495
            P+IL ++L+ + L +   G+ D  A  F++AP +  +++ V LL+ LGA+     D   
Sbjct: 361 PPQILASDLSGLALDLAHWGVHDPSALAFLDAPPEAALKESVALLKNLGAL-----DNSG 415

Query: 496 RLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSDKQQSADDK 555
            LT  G  +  L + PRLA MV+ +++ G  K+  ++A  L+ Q       D     D++
Sbjct: 416 GLTRQGHLMRGLSLPPRLAAMVIASAEEGAGKKAAMLAVMLTEQGLGGNDID----LDER 471

Query: 556 HRRFNHEDSD 565
            RRF  E S+
Sbjct: 472 LRRFFSERSE 481