Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 1285 a.a., hypothetical protein from Acinetobacter radioresistens SK82

 Score =  949 bits (2454), Expect = 0.0
 Identities = 557/1306 (42%), Positives = 775/1306 (59%), Gaps = 75/1306 (5%)

Query: 30   LIKDRFRFSKRIDGASKIKNESARNAVFDEIALDIAQSMMVVEQRKQQMPKIEYPALLPV 89
            + +D +R ++   G  K  N      +F++       S   V  R +++P I+    LPV
Sbjct: 12   MARDSYRLNRL--GKGKDANPKQYQELFEK-------SNAKVRARVERLPNIKLNQDLPV 62

Query: 90   SQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAARSVA 149
            +Q  D + +AI  HQV+IVAGETGSGKTTQLP+I    GRG  G+IGHTQPRRLAARSV+
Sbjct: 63   TQYADKLIEAIQTHQVIIVAGETGSGKTTQLPQIAMLAGRGLTGMIGHTQPRRLAARSVS 122

Query: 150  NRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTIIIDEA 209
             RIAEE+  +LG  +G+KVRF +Q S  + ++LMTDGILLAE+ +DR+L +YDTIIIDEA
Sbjct: 123  QRIAEEVGEKLGESIGFKVRFNEQGSQDSIVRLMTDGILLAELTHDRYLTKYDTIIIDEA 182

Query: 210  HERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEVSGRTYPVEVR 269
            HERSLNIDFI+GYLKQL+ +RPDLKVIITSAT+D  RFS +F+ AP+ EV GR++PVEVR
Sbjct: 183  HERSLNIDFIMGYLKQLIKKRPDLKVIITSATLDVNRFSHYFNGAPVYEVEGRSFPVEVR 242

Query: 270  YRP-----LAGDDDSESD---RDQLEGIFQAVDELCDEG-------LGDILIFMNGEREI 314
            YRP     +AG DD E D    +    + QAV+E   +          DILIF + E+EI
Sbjct: 243  YRPISDLNIAGSDDDEFDDFEENLPRAVVQAVEECFKDAEEKGHPEHADILIFSSTEQEI 302

Query: 315  RDTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPHA-GRRIVLATNVAETSLTVPGIKY 373
            R+  + L K   R TEI+PL+ARL  GEQ KIF P   GRRI++ATNVAET+LTVP I+Y
Sbjct: 303  RELQETLEKHGPRHTEILPLFARLGLGEQQKIFNPGGKGRRIIIATNVAETALTVPNIRY 362

Query: 374  VIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPE 433
            VID G ARISRYSYR++VQRLPIE ISQA+ANQRKGRCGR   G+CIRLYSEEDFLSRPE
Sbjct: 363  VIDSGFARISRYSYRSRVQRLPIEAISQAAANQRKGRCGRIAPGVCIRLYSEEDFLSRPE 422

Query: 434  FTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDP 493
            FT+PEI RTNLASVILQM +LGLG++E F F+E PD R + DG +LL ELGA+N++    
Sbjct: 423  FTEPEIKRTNLASVILQMQSLGLGNLENFDFIEPPDHRLVNDGRKLLIELGALNEK---- 478

Query: 494  KKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSDKQQSAD 553
            K  LT+ G+ +AR+PIDPRLARM+L  +  G L E +II SAL++QDPRERP+DKQ  AD
Sbjct: 479  KAELTKIGQMMARMPIDPRLARMILGGAHFGALNEALIIVSALAVQDPRERPADKQTQAD 538

Query: 554  DKHRRFNHEDSDFLTLVNLWHYI-GQQQKALTSNQFRRQCKLDYLNYLRVREWQDVYTQL 612
             KH  F   DSDFL  + LW  + G +   L+ N+ R   +  +L++LR+REW+  Y QL
Sbjct: 539  QKHALFKEADSDFLFYLKLWSTLKGNKDNQLSENKRRAFARQHFLSWLRLREWKQTYKQL 598

Query: 613  HQSTREMGFKLNDEPGSYHAVHSAILVGLLSHIGMKDQEKNEYHGARNARFNIFPASGLF 672
             +    +    ND+P SY  +H A+L GLLS I  K  EKN Y   R  +  IFPAS L 
Sbjct: 599  VELAEGLKLSFNDKPASYENLHRALLTGLLSFIANKTDEKNVYMAVRQQKARIFPASVLH 658

Query: 673  KKQPKWVMSAELVETSKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHWSKKNAAVMAYEK 732
            K    WVM+ E+VETS+++ R +AKIEP+WI   A+ L K  Y EPHWSKK   V AY++
Sbjct: 659  KAGASWVMAFEMVETSQVYLRTLAKIEPEWILLAARDLLKHHYFEPHWSKKTGIVNAYDQ 718

Query: 733  VMLYGIPIVPKRLVNYGTIDPVLSREIFIRSALVEGDWETKHAFFKQNRALLAEVEELEH 792
            + L+G+ I PKRL N+  +D   + EIF+R AL  G+      F K N   L EVE +E 
Sbjct: 719  ISLFGLIIEPKRLTNFEKVDQAAAHEIFLRDALTTGNLGIIPPFLKHNLLKLEEVERVED 778

Query: 793  KSRRRDILVDDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLSFEKEMLFKGDAS 852
            K RRRD++VD+E ++QFY  ++ +E+ S R F+ W  T   K P  L  ++E L+  D  
Sbjct: 779  KLRRRDLVVDEETVYQFYASKIPSEIASRRSFEDWLATVEAKEPRFLYVDEESLWLNDRP 838

Query: 853  HITDLDYPNFWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPHGFDWQIPGLRHE 912
              T   +P++   G L+L  SY+F+P  + DG TV IPL  L QV    + W IPG R E
Sbjct: 839  --TTQQFPDYLQNGQLRLAASYRFDPSHDEDGATVKIPLQALAQVNEEIWSWGIPGWRQE 896

Query: 913  LVVSLIKSLPKTLRKNFVPAPNYADAFLARVTPFEMP--LLDAMEKELRRMTGVTVLRED 970
            LV +L+KSLPK  R+N VP P+ A   L  V   ++   +L+ +   LR   G  +  +D
Sbjct: 897  LVEALLKSLPKDKRRNLVPIPDTARKLLREVQDKDLQRHVLNYLTFALR---GEQITEKD 953

Query: 971  WKLDQLPAHLKITYRAVDHRNRKLNESCDLHELKESLKEKVQETLSQVADDDIEQRDLHT 1030
            + ++++  +L    +  D + R + +  DL ELK   +++ Q  + Q+  +         
Sbjct: 954  FSVERIDQYLIPFIKVTDEKGRVIEKGRDLAELKARCRQETQRPVKQLKGE--------- 1004

Query: 1031 WSFGELPKVY----QQKRGGFEVRAYPALVDKK----------DSVEIKLFETEQEQLSA 1076
              +   P+ +     QK  G  ++ Y ALV  K            V I+ F  + E +  
Sbjct: 1005 --YKTFPESFIFEATQKVTGVVIKQYQALVPVKSFSEIEAKDESGVVIQSFNDQAEAIKQ 1062

Query: 1077 MRAGQRRLILLNVPSPIKYLHANLPNKSKLGLYFNPYGKVLDLIDDCIACGVDKLIEERG 1136
             R G  RLI + +   I+ L   L     L L ++P G    L    +   +   + E  
Sbjct: 1063 HREGVIRLIHMQLGDLIRQLKKQL--GKPLALAYSPLGDRAKLEQMLVYATLQMALTE-- 1118

Query: 1137 GMVWEPQAFEALKEHVRAELGDTVVEIAKQVETILTTAYNINKRLKGKVDFTMAFALSDV 1196
             +    + F+ +   V+        +    +  I     +I ++L          ++ D+
Sbjct: 1119 -LPVNAEEFQNVLAEVKGNFLSYGQQALAALSDIFIQWQDIRRKLLVLDPEIFGRSIDDI 1177

Query: 1197 KAQIEGLIFSGFATECGWKRLPDILRYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYK 1256
            + Q++ +    F      +   +  RY++A+  R+E+LP +  +D   + +++   +K  
Sbjct: 1178 EDQLDLMQLGDFVYTQPPEVWAEFPRYLKALVLRLERLPNNLQRDEAAIAQVDPWMDKLF 1237

Query: 1257 ELLNKIPKGMAIPDNVREIRWMLEELRVSYFAQQLGTPYPVSDKRI 1302
             + N  PK +       +  +MLEELR+S F+Q + T  PVS  R+
Sbjct: 1238 SVRNN-PKSI-------DFYFMLEELRISLFSQPMKTKIPVSATRL 1275