Pairwise Alignments

Query, 338 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 342 a.a., ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) from Variovorax sp. SCN45

 Score = 51.2 bits (121), Expect = 4e-11
 Identities = 63/253 (24%), Positives = 103/253 (40%), Gaps = 27/253 (10%)

Query: 25  RWLTPLATAISVNANAAPIKIAVSQTPLSSPFYLADQLGFFKQQGIDVELVACSG----- 79
           R L   A A+   A+A   + A   T LS    +  ++G +K  G+   L+  SG     
Sbjct: 19  RRLLQAAAALGAAASAGWTRAAAPATDLSG---VTLRVGTYK--GLWRPLLTASGQANTP 73

Query: 80  ----------GVQCSQALFQGAVSYATASESVAMFSSFERQDFLILASFVQSDNDLKLLA 129
                     GV   +A+   A+   + SE   +F++ ++    ++A   +  N+   LA
Sbjct: 74  YKIDWRELNNGVLHIEAINGDALDLGSGSEIPPVFAARQKSSVRLVAVTHEDLNNQATLA 133

Query: 130 LESETIRSVADLHNKRVGMIRASASEFYFDSLLLANNLKGIPIDKVYGTADQLYQQLFDK 189
            +   IR++AD   KRVG +RA+ S +Y    L    L    I  V  T           
Sbjct: 134 RKDAPIRTIADFKGKRVGYVRATTSHYYLAKQLAEAGLSFSDIQAVSLTPSDGLSAFARG 193

Query: 190 QLDAISIWEPWGYKIGVAAESKVTNLSLPGIYTLSFNL-LTMKPTTEEEKQRSLA---IL 245
            LDA   W  +GY   +A       +   G+  LS N  +   P   ++  R  A   +L
Sbjct: 194 DLDA---WAIYGYNGQLARIQYGARVIKTGVGYLSGNFPIYANPRALDDAPRRAALADLL 250

Query: 246 KALKQAIDWIHQN 258
           + L++A  W + N
Sbjct: 251 QRLQRAFAWSNGN 263