Pairwise Alignments

Query, 342 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., amino acid ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  405 bits (1040), Expect = e-117
 Identities = 203/343 (59%), Positives = 253/343 (73%), Gaps = 5/343 (1%)

Query: 5   LTVLASVVAASSAMLSLSASA---AESTLDKVLSQGFITCGVSTGLPGFSNPNAKGEWEG 61
           + VL S +A  SA   L  S    A +TLD V  +GF+ CGVS GLPGFS P+A G+  G
Sbjct: 1   MKVLKSTLAIVSAAAVLGVSGFAQAGATLDAVQKKGFVQCGVSDGLPGFSVPDASGKILG 60

Query: 62  IDVEYCQAMAAAVLGDKTKVKFVPLTAKERFTALQSGEIDVLSRNTTWTLQRDSALGLNF 121
           ID + C+A+AAAV GD TKVKF  L AKERFTALQSGE+D+LSRNTT T  RD+ +GL F
Sbjct: 61  IDADVCRAVAAAVFGDATKVKFSQLNAKERFTALQSGEVDILSRNTTMTSSRDAGMGLKF 120

Query: 122 VG-VNYYDGQGFMVKKDLGVKSAKELNGASVCVQSGTTTELNLADYFRNSGMTYKPVVFD 180
            G + YYDG GF+V   LGVKSAKEL+GA++C+Q+GTTTELN++DYFR + + Y P+ FD
Sbjct: 121 PGFITYYDGIGFLVNNKLGVKSAKELDGATICIQAGTTTELNVSDYFRGNNLKYTPITFD 180

Query: 181 TAAQTSKGFDAGRCDVLTTDQSGLYALRLNLEKPDSAVVLPEIISKEPLGPVVRQDDDKW 240
           T+ +++K  ++GRCDVLT+D+S L+A R  L  P   VVLPE ISKEPLGPVVR  DD+W
Sbjct: 181 TSDESAKSLESGRCDVLTSDKSQLFAQRSKLAAPKDYVVLPETISKEPLGPVVRNGDDEW 240

Query: 241 FNVAKWVLYAMVNAEEYGITSKNVDEMMKS-DNPEVKRILGLDGPKGTGLGIRDDWSYQI 299
             + +WV YAM+NAEE GITSKNV+   KS  NP+V R+LG DG  G  L ++ DW  QI
Sbjct: 241 LAIVRWVGYAMLNAEEAGITSKNVEAEAKSTKNPDVARLLGADGEYGKDLKVKKDWVVQI 300

Query: 300 VKQVGNYGESFDRTVGSGSPLKIDRGVNALWNAGGFMYAPPIR 342
           VKQVGNYGE F+R +G  +PL+IDRG+NALWN GG  YAPP+R
Sbjct: 301 VKQVGNYGEVFERNLGKSTPLEIDRGLNALWNNGGIQYAPPVR 343