Pairwise Alignments

Query, 342 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 277 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 62.8 bits (151), Expect = 1e-14
 Identities = 67/279 (24%), Positives = 117/279 (41%), Gaps = 16/279 (5%)

Query: 3   NKLTVLASVVAASSAMLSLSASAAESTLDKVLSQGFITCGVSTGLP--GFSNPNAKGEWE 60
           NK  V +  +A  S   +L  +A    LD V   G +      G P  G+ +P +K +  
Sbjct: 4   NKFIVTSLALAIGS--FTLGGAAWADRLDDVRKAGVLRVAAFDGNPPFGYIDPASKKQ-V 60

Query: 61  GIDVEYCQAMAAAVLGDKTKVKFVPLTAKERFTALQSGEIDVLSRNTTWTLQRDSALGLN 120
           G D++     A ++     K++ VP     R   L SG++DV+  + T T +R  A  ++
Sbjct: 61  GHDIDLATEFAKSL---GVKIELVPTNPANRIPLLTSGKVDVVFASFTITDER--AKAVD 115

Query: 121 FVGVNYYDGQGFMVKKDLGVKSAKELNGASVCVQSGTTTELNLADYFRNSGMTYKPVVFD 180
           F    +  GQ F+ KK + +K A ++    +  + GTT E NL   + ++    K V++D
Sbjct: 116 FTTPYFLVGQQFLAKKGV-LKDAAQIKDIRIGTEKGTTMESNLRKNYPDA----KVVLYD 170

Query: 181 TAAQTSKGFDAGRCDVLTTDQSGLYALRLNLEKPDSAVVLPEIISKEPLGPVVRQDDDKW 240
            +         G    +T D   L A    +   +   + P  +SKE LG  V + + + 
Sbjct: 171 DSPFALAALRNGNVQAITNDGVKLTAQWNAIPDKEKYEIPPITVSKEYLGAAVPKGEARL 230

Query: 241 FNVAK-WVLYAMVNAEEYGITSKNVDEMMKSDNPEVKRI 278
                 W++ +  N     I         K+  P + +I
Sbjct: 231 LEALNTWLVDSEKNGRALAIYDTWFGPNSKAPLPRLLKI 269