Pairwise Alignments

Query, 342 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 342 a.a., putative amino-acid ABC transporter-binding protein YhdW from Pseudomonas putida KT2440

 Score =  417 bits (1072), Expect = e-121
 Identities = 201/339 (59%), Positives = 260/339 (76%), Gaps = 1/339 (0%)

Query: 5   LTVLASVVAASSAMLSLSASAAESTLDKVLSQGFITCGVSTGLPGFSNPNAKGEWEGIDV 64
           L    +V+ A++A+ ++S + A +TLD V  +GF+ CGVS GLPGFS P+A+G+  GID 
Sbjct: 4   LKTTLAVLTAAAALGAVSTAQAGATLDAVKKKGFVQCGVSDGLPGFSVPDAQGKIVGIDA 63

Query: 65  EYCQAMAAAVLGDKTKVKFVPLTAKERFTALQSGEIDVLSRNTTWTLQRDSALGLNFVGV 124
           + C+A+AAAV GD TKVKF  L AKERFTALQSGE+DVLSRNTTWT  RD+ +GL F GV
Sbjct: 64  DVCRAVAAAVFGDATKVKFSQLNAKERFTALQSGEVDVLSRNTTWTSSRDAGMGLVFAGV 123

Query: 125 NYYDGQGFMVKKDLGVKSAKELNGASVCVQSGTTTELNLADYFRNSGMTYKPVVFDTAAQ 184
            YYDG GF+V K LGV SAKEL+GA++C+Q+GTTTELN++D+FR +G+ Y P+ FDT+ +
Sbjct: 124 TYYDGVGFLVNKKLGVSSAKELDGATICIQAGTTTELNVSDFFRANGLKYTPITFDTSDE 183

Query: 185 TSKGFDAGRCDVLTTDQSGLYALRLNLEKPDSAVVLPEIISKEPLGPVVRQDDDKWFNVA 244
           ++K  ++GRCDVLT+D+S L+A R  L  P   VVLPE ISKEPLGPVVR+ D++WF++ 
Sbjct: 184 SAKSLESGRCDVLTSDKSQLFAQRSKLAAPTEYVVLPETISKEPLGPVVRKGDEEWFSIV 243

Query: 245 KWVLYAMVNAEEYGITSKNVD-EMMKSDNPEVKRILGLDGPKGTGLGIRDDWSYQIVKQV 303
           KW L+AM+NAEE GITSKNV+ E   + NP+V R+LG DG  G  L +  DW  QIVKQV
Sbjct: 244 KWTLFAMLNAEEAGITSKNVEAEAKATKNPDVARLLGADGEYGKDLKLPKDWVVQIVKQV 303

Query: 304 GNYGESFDRTVGSGSPLKIDRGVNALWNAGGFMYAPPIR 342
           GNYGE F++ +G  + LKIDRG+NALWN GG  YAPP+R
Sbjct: 304 GNYGEVFEKNLGQSTDLKIDRGMNALWNNGGIQYAPPVR 342