Pairwise Alignments

Query, 342 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 267 a.a., ABC transporter, substrate binding protein (amino acid) from Agrobacterium fabrum C58

 Score = 62.8 bits (151), Expect = 1e-14
 Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 22/263 (8%)

Query: 6   TVLASVVAASSAMLSLSASAAESTLDKVLSQGFITCGVSTGLPGFSNPNAKGEWEGIDVE 65
           +V A++   +      SA+A   ++D ++ +G +  GV  G P F + +A+G   G D +
Sbjct: 9   SVAAAIAVCAGIFTGFSANA--QSVDDIVKRGSVKIGVLVGAPPFGSVDAQGNPVGYDAD 66

Query: 66  YCQAMAAAVLGDKTKVKFVPLTAKERFTALQSGEIDVLSRNTTWTLQRDSALGLNFVGVN 125
               +    LG    V  V LT   R  AL+SG++D L      T +R  A+    +  N
Sbjct: 67  VA-TLIGKYLG--VPVTMVQLTPPSRIPALESGKVDFLVATLAPTPERAKAV----MFTN 119

Query: 126 YYDG--QGFMVKKDLGVKSAKELNGASVCVQSGTTTELNLADYFRNSGMTYKPVVFDTAA 183
            Y     G    KD  ++  ++L G +V V  G++ E    +  +  G+T   + FD  A
Sbjct: 120 PYSAFQVGIYSHKDTKIEKWEDLKGMTVGVNRGSSVEREFVNREKELGLTI--LRFDDDA 177

Query: 184 QTSKGFDAGRCDVLT-TDQSGLYALRLNLEKPDSAVVLPEIISKEPLGPVVRQDD---DK 239
            T +   +G+   +   D     A++L   + D+   +    S +P    VR+D     +
Sbjct: 178 TTMQALFSGQVQAIAGPDAQANAAIKL---RGDTTTEVKFFFSIQPNSMTVRKDAVDLHQ 234

Query: 240 WFNVAKWVLYAMVNAEEYGITSK 262
           W N    + Y   N E   I  K
Sbjct: 235 WLN--NTIYYIKQNGELDAIARK 255