Pairwise Alignments

Query, 401 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 393 a.a., amino acid ABC transporter permease from Pseudomonas simiae WCS417

 Score =  399 bits (1025), Expect = e-116
 Identities = 203/380 (53%), Positives = 274/380 (72%), Gaps = 4/380 (1%)

Query: 24  NPTFRSVVFQLLAVCVLAFFLYTIVNNALTNLESRGIATGFAFLEQTAGFGISQSLIPYD 83
           +P  R+ +FQ++ +  +    + + NN  TNL+ RGI +GF FLE++AGFGI+Q LI Y 
Sbjct: 16  DPKLRAWLFQIITIVAVVSLGWYLFNNTQTNLQHRGITSGFDFLERSAGFGIAQHLIDYT 75

Query: 84  ETYSYGRTFLVGLLNTALVSVLGILLATILGFLIGIARLSSNWLISRLAAVYIETFRNLP 143
           E+ SY R F++GLLNT LV+ +G++LAT+LGF+IG+ARLS NW+I++LA VY+E FRN+P
Sbjct: 76  ESDSYARVFVIGLLNTLLVTFIGVILATLLGFVIGVARLSPNWMINKLATVYVEVFRNIP 135

Query: 144 LLLQIFFWYFVVLQALPSARESMHLGEWFYLNIKGLYLAKPIFESGSIWVLVALIAGIIA 203
            LLQI FWYF V   +P  R S + G+ F+++ +GL +   I   G    +V+++  I+A
Sbjct: 136 PLLQILFWYFAVFLTMPGPRNSHNFGDTFFVSSRGLNMPAAIAADGFWPFVVSIVVAIVA 195

Query: 204 CWVLSIWATNRQRLTGQQTPMGRYI--LLLCVTFPVLVYFLLGQPITAEYPVLRGFNFQG 261
             +++ WA  R   TG   P  ++   L L +  P L   + G P+  E P L+GFNF G
Sbjct: 196 IVLMARWANKRFEATG--VPFHKFWAGLALFIVIPALCALIFGAPLHWEMPKLQGFNFVG 253

Query: 262 GISVLPELAALLVALTIYTASFIAEIVRSGINAVSHGQTEAAMSLGLTRTKTLKLVIIPQ 321
           G  ++PEL AL +ALT+YTA+FIAEIVRSGI +VSHGQTEAA SLGL    TL+ VIIPQ
Sbjct: 254 GWVLIPELLALTLALTVYTAAFIAEIVRSGIKSVSHGQTEAARSLGLRPGPTLRKVIIPQ 313

Query: 322 ALRIIIPPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTTLNQTGQAIEIISMTMLVYLTL 381
           ALR+IIPPLTSQYLNL KNSSLA  IGYP++VS+FAGT LNQTGQAIE+I++TM VYL +
Sbjct: 314 ALRVIIPPLTSQYLNLAKNSSLAAGIGYPEMVSLFAGTVLNQTGQAIEVIAITMSVYLAI 373

Query: 382 SLLTSALMNLYNRKVALVER 401
           S+  S LMN YN+++AL+ER
Sbjct: 374 SISISLLMNWYNKRIALIER 393