Pairwise Alignments

Query, 401 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 221 a.a., amino acid ABC transporter permease from Pseudomonas simiae WCS417

 Score = 85.1 bits (209), Expect = 2e-21
 Identities = 55/165 (33%), Positives = 92/165 (55%), Gaps = 5/165 (3%)

Query: 237 VLVYFLLGQPITAEYPVLRGFNFQGGISVLPELAALLVALTIYTASFIAEIVRSGINAVS 296
           V V F  G P+  +  ++     Q GI + P + A ++  ++  A++  EI+R+ I ++ 
Sbjct: 57  VYVSFFRGTPLLVQLFLIYYGLPQVGIELDP-IPAAMIGFSLNMAAYACEILRAAIGSIE 115

Query: 297 HGQTEAAMSLGLTRTKTLKLVIIPQALRIIIPPLTSQYLNLTKNSSLAMAIGYPDLVSVF 356
            GQ EAA S+G+TR +TL+  I+PQA+R  +PPL + +++L K+++LA  I  P+L   F
Sbjct: 116 RGQWEAAASIGMTRAQTLRRAILPQAMRTALPPLGNSFISLVKDTALAATIQVPEL---F 172

Query: 357 AGTTLNQTGQAIEIISMTMLVYLTLSLLTSALMNLYNRKVALVER 401
               L  + +  EI +M +   L   +L S L +L NR    V R
Sbjct: 173 RQAQL-VSARTFEIFTMYLSAALIYWILASILAHLQNRLEDRVNR 216



 Score = 50.1 bits (118), Expect = 6e-11
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 15/98 (15%)

Query: 71  AGFGISQSLIPYDETYSYGRTFLVGLLNTALVSVLGILLATILGFLIGIARLSSNWLISR 130
           AGF ++    P+          L G   T ++S+ G+    +LGF + + RLS   L+S 
Sbjct: 3   AGFQLALDSAPF---------LLKGAYYTVILSLGGMFFGLLLGFGLALMRLSRFKLVSW 53

Query: 131 LAAVYIETFRNLPLLLQIFFWYF------VVLQALPSA 162
           LA VY+  FR  PLL+Q+F  Y+      + L  +P+A
Sbjct: 54  LARVYVSFFRGTPLLVQLFLIYYGLPQVGIELDPIPAA 91